Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 123965541

GI number: 123965541

Start: 281450

End: 282454

Strand: Reverse

Name: yrbE [H]

Synonym: P9515_03061

Alternate gene names: 123965541

Gene position: 282454-281450 (Counterclockwise)

Preceding gene: 123965542

Following gene: 123965538

Centisome position: 16.57

GC content: 36.12

Gene sequence:

>1005_bases
ATGAAACCAACCTCATCTTCAGTAAAGGTTGGAGTAATCGGGATAGGAAATATGGGATGGCATCATGCTCGTGTGCTTAG
TTTGCTGAAAGATGCAGATTTAGTAGGAGTTGCAGATCCAAACGAAAACAGAGGTAAATTGGCGGTAGAGCAATTTCAAT
GTGAGTGGTTTAAAGATTATCATGAGCTTCTTTCAAAAGTTGATGCGATTTGTATAGCTGTCCCTACGCTTCTTCACCAC
AAAGTAGGTCTAGATTGTCTTAAGGCCGGTATTAATGTTCTTATAGAGAAACCTATTGCAGCTAATGAGTTGGAAGCAAA
ATCTTTAATCAATGCCTCTAAAGTTAGTAATTGTCTTCTACAAGTTGGGCATATTGAAAGATTTAATCCTGCTTTTAGAG
AGTTAAATAAAATAGTTCAAAATGAAGAAATTGTTGTTTTAGAAGCAAGAAGGCACAGTCCTCATGCAGATAGAGCAAAT
GATGTATCAGTTGTAATGGATTTAATGATTCATGATATTGATCTAGTTCTTGAATTAGTAAATTCAAAAATACAGAAATT
AGCGGCTGTAGGAGGAAGAAACAGTGAGGGCTTAATAGATTATGTAAATGCTACTTTAGTTTTCAACAATAATATTATTG
CGAGTTTGACTGCCAGCAAAATGAGTCATAAAAAAATCAGGAGTTTAAGTGCACATTGCCAGAATGGTCTTGTGGAAACG
GACTTCTTAAACCATTCATTACAAATCCATAGAAAGGCTCATGAATCCTATACAGCAGAGCATGGAGAATTAGTTTATAG
AAATGATGGTTATGTTGAGGAAGTAAGCACAACCTCTATTGAACCTTTGTATGCAGAGTTAGAGCACTTTCTTAAGTGCG
TACAAGGTAAAGAATCTCCCGAGGTGGATGGAGAACAAGCCTCAAGGGCATTAAAAATTGCAGATTTTATTGAGTGTGCA
GTAGAAAACTCAGGTGATGCAATATCACTTGAAATACCTTTCTAA

Upstream 100 bases:

>100_bases
TGTCAGGTCCCAAAATTGATCGTGTAAAAATATTTCTGCCAAAAAGTTAAAATTGACATCCAATGAAGGATAATAACTTA
ATATACATGGACTATAAGAT

Downstream 100 bases:

>100_bases
TCAATAAATAATATTTTATTTAAATCCAACTGCAGCTTGCCAAACAAAAACTAGTAAAAAGAAAAATAAAGGTATTAAAG
GAAGAACATCAACGGTTGGA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKPTSSSVKVGVIGIGNMGWHHARVLSLLKDADLVGVADPNENRGKLAVEQFQCEWFKDYHELLSKVDAICIAVPTLLHH
KVGLDCLKAGINVLIEKPIAANELEAKSLINASKVSNCLLQVGHIERFNPAFRELNKIVQNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFNNNIIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKAHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKESPEVDGEQASRALKIADFIECA
VENSGDAISLEIPF

Sequences:

>Translated_334_residues
MKPTSSSVKVGVIGIGNMGWHHARVLSLLKDADLVGVADPNENRGKLAVEQFQCEWFKDYHELLSKVDAICIAVPTLLHH
KVGLDCLKAGINVLIEKPIAANELEAKSLINASKVSNCLLQVGHIERFNPAFRELNKIVQNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFNNNIIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKAHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKESPEVDGEQASRALKIADFIECA
VENSGDAISLEIPF
>Mature_334_residues
MKPTSSSVKVGVIGIGNMGWHHARVLSLLKDADLVGVADPNENRGKLAVEQFQCEWFKDYHELLSKVDAICIAVPTLLHH
KVGLDCLKAGINVLIEKPIAANELEAKSLINASKVSNCLLQVGHIERFNPAFRELNKIVQNEEIVVLEARRHSPHADRAN
DVSVVMDLMIHDIDLVLELVNSKIQKLAAVGGRNSEGLIDYVNATLVFNNNIIASLTASKMSHKKIRSLSAHCQNGLVET
DFLNHSLQIHRKAHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKESPEVDGEQASRALKIADFIECA
VENSGDAISLEIPF

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: NA

Molecular weight: Translated: 36894; Mature: 36894

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTSSSVKVGVIGIGNMGWHHARVLSLLKDADLVGVADPNENRGKLAVEQFQCEWFKDY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
HELLSKVDAICIAVPTLLHHKVGLDCLKAGINVLIEKPIAANELEAKSLINASKVSNCLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
QVGHIERFNPAFRELNKIVQNEEIVVLEARRHSPHADRANDVSVVMDLMIHDIDLVLELV
HHCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NSKIQKLAAVGGRNSEGLIDYVNATLVFNNNIIASLTASKMSHKKIRSLSAHCQNGLVET
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEH
DFLNHSLQIHRKAHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKESP
HHHCCHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
EVDGEQASRALKIADFIECAVENSGDAISLEIPF
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MKPTSSSVKVGVIGIGNMGWHHARVLSLLKDADLVGVADPNENRGKLAVEQFQCEWFKDY
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
HELLSKVDAICIAVPTLLHHKVGLDCLKAGINVLIEKPIAANELEAKSLINASKVSNCLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHH
QVGHIERFNPAFRELNKIVQNEEIVVLEARRHSPHADRANDVSVVMDLMIHDIDLVLELV
HHCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
NSKIQKLAAVGGRNSEGLIDYVNATLVFNNNIIASLTASKMSHKKIRSLSAHCQNGLVET
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEH
DFLNHSLQIHRKAHESYTAEHGELVYRNDGYVEEVSTTSIEPLYAELEHFLKCVQGKESP
HHHCCHHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCC
EVDGEQASRALKIADFIECAVENSGDAISLEIPF
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]