Definition | Prochlorococcus marinus str. AS9601, complete genome. |
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Accession | NC_008816 |
Length | 1,669,886 |
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The map label for this gene is 123968888
Identifier: 123968888
GI number: 123968888
Start: 1128732
End: 1130030
Strand: Reverse
Name: 123968888
Synonym: A9601_13551
Alternate gene names: NA
Gene position: 1130030-1128732 (Counterclockwise)
Preceding gene: 123968889
Following gene: 123968885
Centisome position: 67.67
GC content: 39.88
Gene sequence:
>1299_bases ATGAAACTCTTCCAACAAATGTTGGTTGCTGGTGCATCTTTGAGCTTATTAGCTCCAGTTGCTGCCCAAGCTTCCGATGT TGTTAACATTGAAGAAATGAACAGCTATGTACGTAGCCAATCAAAATCTTCGAGACTTAACAGTAAAACATTCATTAACG AAGTTAGTGCTGATATCGCTAACTTAAAGGGTCGTGTTGATGGCCTTGAAGTTAAACAAAAAGAATTTGAAGCCGGTGGC TTCTCAGATACAACTGTAATGGATCAAAAAGTTGTATTTGATATTGGTGCAATAGATCTCAGTGAAACCGATGGCTCCGA TGAGGCTGCTAAATTTGCCTACTCTTATAGAGCAAATCTTAATACAAGTTTTACTGGAGACGACAACCTCTATGTGAGAC TCCTTTCTGGTAATCATGGCGGCTGGATGAAAAGTAACGTCGACGGAGGTTACTTGACCTCAGTTGGTAAAGGTGACAGC TTAACTGTTGATAAGATTTGGTACTCCTTCCCAGTTGGGGAAAACAATACTGTATGGGTAGGTCCAAAGATTGAAAACTA TTACATGCATGGTGCTGCCCCTTCAATTTATAAGCCTGTTACAAAACAATTCACACTTGGTGGAAACGGTAGCGCTTATG GAGCAAGTACTGATACTGGTGCTGGTTGGGCTTTTAAAGCAGATAATGGATTTTCGATTAGTTCAAACGTAGGTACTAAA TCACATTCAACCCAAAAAGTAGGTGGTAGTTACGTTGATAGTGGACTTCTCACTGACGAAACAAAAACAAGTTGGGCAAC CCAGATTGGTTATACTCAGCCACAATACTCTGTTTCTGCAATTTTTAACTTAAAGTACAATGGTTGGACAGACGGTTATT TACACACCACGACAGCTAAAGCTGCTATTTCTGGTGCAGACGGAAATCATACAGCTGTTGGTTTAAGAGGTTGGTGGAGA CCAGATGGAACTGGAACCGCTACACCTTCAATTTCCGTAGGATACGATACGACTCAGTATTCAGGTGTTCCTTCTGGAAC TTCAGATAGTACTGATATGTGGTTTGTCGGCCTCCAGTGGAAGGATATTTTCAATCCTGATGACAAAATTGGCTTAGCAA TGGCACAGCCAACAAAGTTTGATGATGAAACTAATGATCCATTTGCTTATGAACTTTATTATTCATATAAAGTAAATGAT GGCATGACTGTTACACCAACTATTTTTGGTGGAACTGATAGGGATGGTGGAACTGAAGATATTTTTGGAGCAGTTGTTCA AACTACATTTAAATTCTAA
Upstream 100 bases:
>100_bases AGTTACACGGGACTGAAACTTATATATCTTTCCTTTTCTGTTACGCTCGATACAGTATAGGTACCCAAAAAATTTTTGGG CTACTTTAGTGTGAGGTAAA
Downstream 100 bases:
>100_bases ATATAGTGAACAAATTAAAAAACACCCGAAAGGGTGTTTTTTTTTGCTTTTTTATATTTTAAAAACTTTTAGTTTTTTAC CAACAATTCTCTCCTTCCCC
Product: porin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MKLFQQMLVAGASLSLLAPVAAQASDVVNIEEMNSYVRSQSKSSRLNSKTFINEVSADIANLKGRVDGLEVKQKEFEAGG FSDTTVMDQKVVFDIGAIDLSETDGSDEAAKFAYSYRANLNTSFTGDDNLYVRLLSGNHGGWMKSNVDGGYLTSVGKGDS LTVDKIWYSFPVGENNTVWVGPKIENYYMHGAAPSIYKPVTKQFTLGGNGSAYGASTDTGAGWAFKADNGFSISSNVGTK SHSTQKVGGSYVDSGLLTDETKTSWATQIGYTQPQYSVSAIFNLKYNGWTDGYLHTTTAKAAISGADGNHTAVGLRGWWR PDGTGTATPSISVGYDTTQYSGVPSGTSDSTDMWFVGLQWKDIFNPDDKIGLAMAQPTKFDDETNDPFAYELYYSYKVND GMTVTPTIFGGTDRDGGTEDIFGAVVQTTFKF
Sequences:
>Translated_432_residues MKLFQQMLVAGASLSLLAPVAAQASDVVNIEEMNSYVRSQSKSSRLNSKTFINEVSADIANLKGRVDGLEVKQKEFEAGG FSDTTVMDQKVVFDIGAIDLSETDGSDEAAKFAYSYRANLNTSFTGDDNLYVRLLSGNHGGWMKSNVDGGYLTSVGKGDS LTVDKIWYSFPVGENNTVWVGPKIENYYMHGAAPSIYKPVTKQFTLGGNGSAYGASTDTGAGWAFKADNGFSISSNVGTK SHSTQKVGGSYVDSGLLTDETKTSWATQIGYTQPQYSVSAIFNLKYNGWTDGYLHTTTAKAAISGADGNHTAVGLRGWWR PDGTGTATPSISVGYDTTQYSGVPSGTSDSTDMWFVGLQWKDIFNPDDKIGLAMAQPTKFDDETNDPFAYELYYSYKVND GMTVTPTIFGGTDRDGGTEDIFGAVVQTTFKF >Mature_432_residues MKLFQQMLVAGASLSLLAPVAAQASDVVNIEEMNSYVRSQSKSSRLNSKTFINEVSADIANLKGRVDGLEVKQKEFEAGG FSDTTVMDQKVVFDIGAIDLSETDGSDEAAKFAYSYRANLNTSFTGDDNLYVRLLSGNHGGWMKSNVDGGYLTSVGKGDS LTVDKIWYSFPVGENNTVWVGPKIENYYMHGAAPSIYKPVTKQFTLGGNGSAYGASTDTGAGWAFKADNGFSISSNVGTK SHSTQKVGGSYVDSGLLTDETKTSWATQIGYTQPQYSVSAIFNLKYNGWTDGYLHTTTAKAAISGADGNHTAVGLRGWWR PDGTGTATPSISVGYDTTQYSGVPSGTSDSTDMWFVGLQWKDIFNPDDKIGLAMAQPTKFDDETNDPFAYELYYSYKVND GMTVTPTIFGGTDRDGGTEDIFGAVVQTTFKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SLH (S-layer homology) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007049 - InterPro: IPR001119 [H]
Pfam domain/function: PF04966 OprB; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 46556; Mature: 46556
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLFQQMLVAGASLSLLAPVAAQASDVVNIEEMNSYVRSQSKSSRLNSKTFINEVSADIA CHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH NLKGRVDGLEVKQKEFEAGGFSDTTVMDQKVVFDIGAIDLSETDGSDEAAKFAYSYRANL HHCCCCCCCEEEHHHHCCCCCCCCEEECCEEEEEEEEEEECCCCCCCHHHHEEEEEECCC NTSFTGDDNLYVRLLSGNHGGWMKSNVDGGYLTSVGKGDSLTVDKIWYSFPVGENNTVWV CCEECCCCCEEEEEEECCCCCCEECCCCCCEEEECCCCCCEEEEHEEEEECCCCCCEEEE GPKIENYYMHGAAPSIYKPVTKQFTLGGNGSAYGASTDTGAGWAFKADNGFSISSNVGTK CCCCEEEEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCC SHSTQKVGGSYVDSGLLTDETKTSWATQIGYTQPQYSVSAIFNLKYNGWTDGYLHTTTAK CCCCHHCCCHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEHH AAISGADGNHTAVGLRGWWRPDGTGTATPSISVGYDTTQYSGVPSGTSDSTDMWFVGLQW EEEECCCCCEEEEEECEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE KDIFNPDDKIGLAMAQPTKFDDETNDPFAYELYYSYKVNDGMTVTPTIFGGTDRDGGTED HCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHH IFGAVVQTTFKF HHHHHHHHHCCC >Mature Secondary Structure MKLFQQMLVAGASLSLLAPVAAQASDVVNIEEMNSYVRSQSKSSRLNSKTFINEVSADIA CHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH NLKGRVDGLEVKQKEFEAGGFSDTTVMDQKVVFDIGAIDLSETDGSDEAAKFAYSYRANL HHCCCCCCCEEEHHHHCCCCCCCCEEECCEEEEEEEEEEECCCCCCCHHHHEEEEEECCC NTSFTGDDNLYVRLLSGNHGGWMKSNVDGGYLTSVGKGDSLTVDKIWYSFPVGENNTVWV CCEECCCCCEEEEEEECCCCCCEECCCCCCEEEECCCCCCEEEEHEEEEECCCCCCEEEE GPKIENYYMHGAAPSIYKPVTKQFTLGGNGSAYGASTDTGAGWAFKADNGFSISSNVGTK CCCCEEEEEECCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCC SHSTQKVGGSYVDSGLLTDETKTSWATQIGYTQPQYSVSAIFNLKYNGWTDGYLHTTTAK CCCCHHCCCHHHCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEHH AAISGADGNHTAVGLRGWWRPDGTGTATPSISVGYDTTQYSGVPSGTSDSTDMWFVGLQW EEEECCCCCEEEEEECEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE KDIFNPDDKIGLAMAQPTKFDDETNDPFAYELYYSYKVNDGMTVTPTIFGGTDRDGGTED HCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCHHH IFGAVVQTTFKF HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]