Click here to switch to the map view.

The map label for this gene is pdxJ [H]

Identifier: 123968746

GI number: 123968746

Start: 1033903

End: 1034619

Strand: Reverse

Name: pdxJ [H]

Synonym: A9601_12131

Alternate gene names: 123968746

Gene position: 1034619-1033903 (Counterclockwise)

Preceding gene: 123968751

Following gene: 123968745

Centisome position: 61.96

GC content: 35.15

Gene sequence:

>717_bases
ATGGCTACTTTAGGAGTAAACATTGATCATATTGCGAATGTAAGGCAAGCAAGGAAAACTGTCGAGCCTGACCCTGTCCA
ATTTGCTTTTTTAGCTGAATTAGGAGGGGCAGATTCCATAACAGTGCATCTAAGAGAAGATAGAAGACATATACAAGATA
GGGACGTATTCCTTCTGAAAGAGACTATAAAAACAAAACTCAACTTAGAGATGGCTGCTACAAAAGAAATGTTAGAAATT
GCCAAAAAAATTCTTCCCGATTATGTAACGCTTGTACCTGAGAAAAGAGAGGAAGTTACTACTGAAGGCGGATTGGATTT
AAAAAGTAATGTGCAATACCTTAAGAAGGCAGTTGGTAGTTTAAAAGATTCAAATATAGAGGTAAGTGCATTTATTGATC
CTCTTAGTGAACAGATAAATTATTCCAAAGAAATAGGCTTTGATTTTATAGAATTACATACTGGAAAATATGCTGAACTA
TCAGGATCTAACCAGCATAAAGAGCTCCAAAGGATCATAGAGTCTACTCACATAGCAAATGACCTCGGATTAGTTGTTAA
TGCTGGTCATGGCCTTAACTATAATAATGTTAGGAAAATTGCATCAATTAACAATATGAACGAGTTAAACATAGGTCATA
GTATTGTTGCAAGGGCTTTAGCGATTGGATTAGAAAAGTCTGTACGTGAAATGAAGTCCCTCATTACATTAAATTAA

Upstream 100 bases:

>100_bases
GTTCTATTTACTATATATTAATAATTTAAGTCTTTGCCTTTTTTTATTAGCTATTATTGGGCGGTTACTAGATTGTCTAG
AAACTAAGATTTACAAAATT

Downstream 100 bases:

>100_bases
TTTTCAAAATGACAACATATTTTTTCGTCGCCGCAAGTGAAAAGTTTTTAACAGTTGAAGAACCACTTGATGAAATTTTG
AAAGAGAGGATGAGGAATTA

Product: pyridoxine 5'-phosphate synthase

Products: NA

Alternate protein names: PNP synthase [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MATLGVNIDHIANVRQARKTVEPDPVQFAFLAELGGADSITVHLREDRRHIQDRDVFLLKETIKTKLNLEMAATKEMLEI
AKKILPDYVTLVPEKREEVTTEGGLDLKSNVQYLKKAVGSLKDSNIEVSAFIDPLSEQINYSKEIGFDFIELHTGKYAEL
SGSNQHKELQRIIESTHIANDLGLVVNAGHGLNYNNVRKIASINNMNELNIGHSIVARALAIGLEKSVREMKSLITLN

Sequences:

>Translated_238_residues
MATLGVNIDHIANVRQARKTVEPDPVQFAFLAELGGADSITVHLREDRRHIQDRDVFLLKETIKTKLNLEMAATKEMLEI
AKKILPDYVTLVPEKREEVTTEGGLDLKSNVQYLKKAVGSLKDSNIEVSAFIDPLSEQINYSKEIGFDFIELHTGKYAEL
SGSNQHKELQRIIESTHIANDLGLVVNAGHGLNYNNVRKIASINNMNELNIGHSIVARALAIGLEKSVREMKSLITLN
>Mature_237_residues
ATLGVNIDHIANVRQARKTVEPDPVQFAFLAELGGADSITVHLREDRRHIQDRDVFLLKETIKTKLNLEMAATKEMLEIA
KKILPDYVTLVPEKREEVTTEGGLDLKSNVQYLKKAVGSLKDSNIEVSAFIDPLSEQINYSKEIGFDFIELHTGKYAELS
GSNQHKELQRIIESTHIANDLGLVVNAGHGLNYNNVRKIASINNMNELNIGHSIVARALAIGLEKSVREMKSLITLN

Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate [H]

COG id: COG0854

COG function: function code H; Pyridoxal phosphate biosynthesis protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788917, Length=233, Percent_Identity=56.6523605150215, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR004569 [H]

Pfam domain/function: PF03740 PdxJ [H]

EC number: =2.6.99.2 [H]

Molecular weight: Translated: 26538; Mature: 26407

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLGVNIDHIANVRQARKTVEPDPVQFAFLAELGGADSITVHLREDRRHIQDRDVFLLK
CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHCCCHHHHHH
ETIKTKLNLEMAATKEMLEIAKKILPDYVTLVPEKREEVTTEGGLDLKSNVQYLKKAVGS
HHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
LKDSNIEVSAFIDPLSEQINYSKEIGFDFIELHTGKYAELSGSNQHKELQRIIESTHIAN
CCCCCEEEEHHHHHHHHHCCCHHHCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCC
DLGLVVNAGHGLNYNNVRKIASINNMNELNIGHSIVARALAIGLEKSVREMKSLITLN
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATLGVNIDHIANVRQARKTVEPDPVQFAFLAELGGADSITVHLREDRRHIQDRDVFLLK
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHCCCHHHHHH
ETIKTKLNLEMAATKEMLEIAKKILPDYVTLVPEKREEVTTEGGLDLKSNVQYLKKAVGS
HHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
LKDSNIEVSAFIDPLSEQINYSKEIGFDFIELHTGKYAELSGSNQHKELQRIIESTHIAN
CCCCCEEEEHHHHHHHHHCCCHHHCCCEEEEECCCCEEECCCCCHHHHHHHHHHHHHHCC
DLGLVVNAGHGLNYNNVRKIASINNMNELNIGHSIVARALAIGLEKSVREMKSLITLN
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA