Click here to switch to the map view.

The map label for this gene is dan [H]

Identifier: 121610272

GI number: 121610272

Start: 3716574

End: 3718055

Strand: Direct

Name: dan [H]

Synonym: Veis_3331

Alternate gene names: 121610272

Gene position: 3716574-3718055 (Clockwise)

Preceding gene: 121610271

Following gene: 121610277

Centisome position: 66.76

GC content: 69.97

Gene sequence:

>1482_bases
GTGATCGACCCCCAAGCCGTATTGCTCGAAGCCGGCCTCGTGGTCGACGGTTCGGGCGGACCCGCGTGGCCCGGCGACGT
GCTGCTGCAGGGCGACCGCATCTTCGCGCTCGGCGAAGGCCTGCGCGGGCGGCTGCCCGAGGGCTTGGGCGTTGCCGATC
TCGACATCGTCGATTGCCGCGCCAAGGTCATCGCACCCGGCTTCATCGACGCGCACACGCACGACGATGCGATCGTGCTG
CGCGACCCGCTGTGCCTGCCCAAGGTGTCGCAGGGCATCACCACCGTGGTGACCGGCAACTGCGGCATCTCGCTCGCGCC
GTACCGCACGCCGCAGTCGAAGCCGCCGCTCACGCTGCTGGGCGCCGATTCGTTCAGGCACGCGACCATGGCCGAGTACC
GCGCGGCCGTCGATGCGACGCAGCCCGCGCTCAACGTGGCCGCGCTCGTCGGCCACACCACGCTGCGCTTCGCGACGATG
CAAGCGCTCGACCGGCCCGCCAGCGGCGACGAACTCGCGCGCATGGAGGCGCTGCTCGACAGCAGCATGGCCGACGGCGC
GCACGGCATGTCGTCGGGCCTGTTCTACGAAGAAGCCTTCGCCGCACCGGCGCAAGAAGTGAGCGCACTCGCCCGCGTCG
TCGCGCGCCACGGCGGCGTCTACGCCACGCACCTGCGCAGCGAGATGCAGCAGATCATCGAGGCGCTGCACGAGGCCGGC
GATTCGGCTTTCAACGCGGGCGTGCCGCTGGTCATCTCGCACCACAAGTGCGCCGGCCCCGCGAATTGGGGCCGCACGAA
AGAGACGCTGGCGCTGATCGAATCGCTCGCGCAGCGCCAGCAGATCGCGATGGACATGTACCCCTACGTGGCCGGCTCCA
CCGTGCTGCGCGAAGACCTGGTGGACGGCGTCATCGACGTGCTGCTGACCTGGTCCGATCCGCATCCCGAGATGACCGGC
CGCCTCGTCTCCGACATCGCGCGCGAGTGGGGCACCACCGAACGGGAGGCGTGCCTGCTTCTCAAGCCCGGCGGCGCGTG
CTACTTCCAGATGCAGGAGGAGGACGTGGAGCGCGTCATCGCGCACCCGCTCACGATGATCGGCAGCGATGGCCTGCCGC
ACGACCGCCATCCGCATCCGCGCCTCTGGGGCGCGTTCCCGCGCGTGTTCGCGCGCTATTGGCGCCAGCGCCGCCTTTTC
ACGCTGGAGCAGGCCGTGCACAAGATGACCGGCATGACCGCGCGCAACTTGCGCATCGCGGATCGCGGCCTGCTGCGCGT
CGGCACGATGGCCGACGTGGTGGTGTTCGACCCGGAGACCATCGCCGACACCGCGACCTACGACAAGCCGCACGGTGTGA
GCGAAGGCGTCGAATGCGTGTTCGTGAATGGCGTGCTGGCCTATCGCGGCGGCGCGGGCGAAGCCCGCGTGCTTGCGCGC
GCGGGGCGAATGCTCACGCGCGCAGGCTACGGAGGCTATTGA

Upstream 100 bases:

>100_bases
CACGCGAAGCCTTCCAGCGCCATGGCATCGACGCCGCCACGCACCCGCTGCAAAGCTGGAACGGCGGCGGCATCAACGAC
GAAAAAGGAGGGCGCGCATC

Downstream 100 bases:

>100_bases
GACCCGTATGAATAGTGCAGTGGCTGCCGCTCGCCCGAACTCAAGATTTGCCCGAGGAAGGCCTTCAGTTTCGGGTGTTG
CGGGTTGCCGAAGAACTGGT

Product: N-acyl-D-amino-acid deacylase

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MIDPQAVLLEAGLVVDGSGGPAWPGDVLLQGDRIFALGEGLRGRLPEGLGVADLDIVDCRAKVIAPGFIDAHTHDDAIVL
RDPLCLPKVSQGITTVVTGNCGISLAPYRTPQSKPPLTLLGADSFRHATMAEYRAAVDATQPALNVAALVGHTTLRFATM
QALDRPASGDELARMEALLDSSMADGAHGMSSGLFYEEAFAAPAQEVSALARVVARHGGVYATHLRSEMQQIIEALHEAG
DSAFNAGVPLVISHHKCAGPANWGRTKETLALIESLAQRQQIAMDMYPYVAGSTVLREDLVDGVIDVLLTWSDPHPEMTG
RLVSDIAREWGTTEREACLLLKPGGACYFQMQEEDVERVIAHPLTMIGSDGLPHDRHPHPRLWGAFPRVFARYWRQRRLF
TLEQAVHKMTGMTARNLRIADRGLLRVGTMADVVVFDPETIADTATYDKPHGVSEGVECVFVNGVLAYRGGAGEARVLAR
AGRMLTRAGYGGY

Sequences:

>Translated_493_residues
MIDPQAVLLEAGLVVDGSGGPAWPGDVLLQGDRIFALGEGLRGRLPEGLGVADLDIVDCRAKVIAPGFIDAHTHDDAIVL
RDPLCLPKVSQGITTVVTGNCGISLAPYRTPQSKPPLTLLGADSFRHATMAEYRAAVDATQPALNVAALVGHTTLRFATM
QALDRPASGDELARMEALLDSSMADGAHGMSSGLFYEEAFAAPAQEVSALARVVARHGGVYATHLRSEMQQIIEALHEAG
DSAFNAGVPLVISHHKCAGPANWGRTKETLALIESLAQRQQIAMDMYPYVAGSTVLREDLVDGVIDVLLTWSDPHPEMTG
RLVSDIAREWGTTEREACLLLKPGGACYFQMQEEDVERVIAHPLTMIGSDGLPHDRHPHPRLWGAFPRVFARYWRQRRLF
TLEQAVHKMTGMTARNLRIADRGLLRVGTMADVVVFDPETIADTATYDKPHGVSEGVECVFVNGVLAYRGGAGEARVLAR
AGRMLTRAGYGGY
>Mature_493_residues
MIDPQAVLLEAGLVVDGSGGPAWPGDVLLQGDRIFALGEGLRGRLPEGLGVADLDIVDCRAKVIAPGFIDAHTHDDAIVL
RDPLCLPKVSQGITTVVTGNCGISLAPYRTPQSKPPLTLLGADSFRHATMAEYRAAVDATQPALNVAALVGHTTLRFATM
QALDRPASGDELARMEALLDSSMADGAHGMSSGLFYEEAFAAPAQEVSALARVVARHGGVYATHLRSEMQQIIEALHEAG
DSAFNAGVPLVISHHKCAGPANWGRTKETLALIESLAQRQQIAMDMYPYVAGSTVLREDLVDGVIDVLLTWSDPHPEMTG
RLVSDIAREWGTTEREACLLLKPGGACYFQMQEEDVERVIAHPLTMIGSDGLPHDRHPHPRLWGAFPRVFARYWRQRRLF
TLEQAVHKMTGMTARNLRIADRGLLRVGTMADVVVFDPETIADTATYDKPHGVSEGVECVFVNGVLAYRGGAGEARVLAR
AGRMLTRAGYGGY

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 53151; Mature: 53151

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPQAVLLEAGLVVDGSGGPAWPGDVLLQGDRIFALGEGLRGRLPEGLGVADLDIVDCR
CCCCCEEEEECCEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHCC
AKVIAPGFIDAHTHDDAIVLRDPLCLPKVSQGITTVVTGNCGISLAPYRTPQSKPPLTLL
HHHCCCCCEECCCCCCEEEEECCCCCCHHHCCCEEEEECCCCEEECCCCCCCCCCCEEEE
GADSFRHATMAEYRAAVDATQPALNVAALVGHTTLRFATMQALDRPASGDELARMEALLD
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SSMADGAHGMSSGLFYEEAFAAPAQEVSALARVVARHGGVYATHLRSEMQQIIEALHEAG
HHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCC
DSAFNAGVPLVISHHKCAGPANWGRTKETLALIESLAQRQQIAMDMYPYVAGSTVLREDL
CCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
VDGVIDVLLTWSDPHPEMTGRLVSDIAREWGTTEREACLLLKPGGACYFQMQEEDVERVI
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECHHHHHHHH
AHPLTMIGSDGLPHDRHPHPRLWGAFPRVFARYWRQRRLFTLEQAVHKMTGMTARNLRIA
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
DRGLLRVGTMADVVVFDPETIADTATYDKPHGVSEGVECVFVNGVLAYRGGAGEARVLAR
CCCCEEECCEEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCEEEECCCCCHHHHHHH
AGRMLTRAGYGGY
HHHHHHCCCCCCC
>Mature Secondary Structure
MIDPQAVLLEAGLVVDGSGGPAWPGDVLLQGDRIFALGEGLRGRLPEGLGVADLDIVDCR
CCCCCEEEEECCEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHCC
AKVIAPGFIDAHTHDDAIVLRDPLCLPKVSQGITTVVTGNCGISLAPYRTPQSKPPLTLL
HHHCCCCCEECCCCCCEEEEECCCCCCHHHCCCEEEEECCCCEEECCCCCCCCCCCEEEE
GADSFRHATMAEYRAAVDATQPALNVAALVGHTTLRFATMQALDRPASGDELARMEALLD
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SSMADGAHGMSSGLFYEEAFAAPAQEVSALARVVARHGGVYATHLRSEMQQIIEALHEAG
HHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCC
DSAFNAGVPLVISHHKCAGPANWGRTKETLALIESLAQRQQIAMDMYPYVAGSTVLREDL
CCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
VDGVIDVLLTWSDPHPEMTGRLVSDIAREWGTTEREACLLLKPGGACYFQMQEEDVERVI
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECHHHHHHHH
AHPLTMIGSDGLPHDRHPHPRLWGAFPRVFARYWRQRRLFTLEQAVHKMTGMTARNLRIA
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
DRGLLRVGTMADVVVFDPETIADTATYDKPHGVSEGVECVFVNGVLAYRGGAGEARVLAR
CCCCEEECCEEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEECCEEEECCCCCHHHHHHH
AGRMLTRAGYGGY
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]