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The map label for this gene is yddQ [C]

Identifier: 121610267

GI number: 121610267

Start: 3711459

End: 3712298

Strand: Direct

Name: yddQ [C]

Synonym: Veis_3326

Alternate gene names: 121610267

Gene position: 3711459-3712298 (Clockwise)

Preceding gene: 121610266

Following gene: 121610268

Centisome position: 66.67

GC content: 69.4

Gene sequence:

>840_bases
GTGCAGATGCCCCGAATGCTCCGCCAACTGATGCACCGCCGCATCGTGATGGTCTCCGCGCTGGTGCTGCTGGTGATCGC
GGTGCTCGCCATCGGCGCGCCGCTGTTCGCCTCCATCGACCCCAACGACACCGCAGTGCTCGACCGCCTGAAGGCGCCGA
GCGCCGCGCACCTGCTCGGCACCGACGAACTGGGCCGCGACCTCTATGCGCGCATCGTGCATGGCGCGCGCTACTCGCTG
GCCATCGCGGCGCTCACCGCCCTCGGCGCGGTCGTCGCCGGCACGGTGCTGGGCCTGATGGCCGGGTTCTTCCGCCGGCT
CGATGCGCCGCTCATGCGCGTGGTCGACGCGATGATGTCCTTCCCCGACATCCTGCTGGCCATCGCGCTGGTGGCGCTTC
TCGGGCCTTCGCTGATGAACACCGTGCTCGCGCTGGTGCTGGTGTACACGCCGCGCGTGGCGCGGGTGGTGCGGGCCTCC
ACGCTCGTGGTGCGCGAGTTGCTGTTCGTCGAAGCGGTGCGCGCGCTGGGCGTGCGCACTGCGCGCATCCTGTGGCGCCA
CATCCTGCCGAACCTGATGTCGCCGATCCTCGTGCAGGTGTCGTTCATCTTCGCCTACGCCATCCTGGCCGAGGCGGGGC
TGTCGTTCCTCGGTGTCGGCGTGCCGCCCGAGATCCCGACCTGGGGCACCATGGTCGCGGGCAGCCAGCAGTACGCGCAC
CAGGCCTTCTGGGTGGTGCTGTTCCCGGGCCTGGCGATCATCTTCACGGCGCTGTCGCTGCAACTGCTGGGCGATGGCGT
GCGCGACTTGCTCGACCCCAAGCTGAAGAAGACTTCGTGA

Upstream 100 bases:

>100_bases
CCAGGGTGCGCTGCTCGTGATCGCCGCGATCTACGTGCTCATCAATTTCTCGATCGACCTGCTGTATGCGGTGGTCGATC
CGCGCGTGAAGGTCTGAGCC

Downstream 100 bases:

>100_bases
TGACGAACGCCAACGACATGCCACGCCTCACGGTCAGCCACCTGAGCACCAGTTTCCCCACCGAAGACGGCCTGATCCGT
TCGGTGGCCGATGTGAGCTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MQMPRMLRQLMHRRIVMVSALVLLVIAVLAIGAPLFASIDPNDTAVLDRLKAPSAAHLLGTDELGRDLYARIVHGARYSL
AIAALTALGAVVAGTVLGLMAGFFRRLDAPLMRVVDAMMSFPDILLAIALVALLGPSLMNTVLALVLVYTPRVARVVRAS
TLVVRELLFVEAVRALGVRTARILWRHILPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAH
QAFWVVLFPGLAIIFTALSLQLLGDGVRDLLDPKLKKTS

Sequences:

>Translated_279_residues
MQMPRMLRQLMHRRIVMVSALVLLVIAVLAIGAPLFASIDPNDTAVLDRLKAPSAAHLLGTDELGRDLYARIVHGARYSL
AIAALTALGAVVAGTVLGLMAGFFRRLDAPLMRVVDAMMSFPDILLAIALVALLGPSLMNTVLALVLVYTPRVARVVRAS
TLVVRELLFVEAVRALGVRTARILWRHILPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAH
QAFWVVLFPGLAIIFTALSLQLLGDGVRDLLDPKLKKTS
>Mature_279_residues
MQMPRMLRQLMHRRIVMVSALVLLVIAVLAIGAPLFASIDPNDTAVLDRLKAPSAAHLLGTDELGRDLYARIVHGARYSL
AIAALTALGAVVAGTVLGLMAGFFRRLDAPLMRVVDAMMSFPDILLAIALVALLGPSLMNTVLALVLVYTPRVARVVRAS
TLVVRELLFVEAVRALGVRTARILWRHILPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAH
QAFWVVLFPGLAIIFTALSLQLLGDGVRDLLDPKLKKTS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=271, Percent_Identity=38.7453874538745, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787054, Length=274, Percent_Identity=39.051094890511, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=45.5252918287938, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1787498, Length=270, Percent_Identity=34.8148148148148, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=35.655737704918, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787549, Length=276, Percent_Identity=34.0579710144928, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788505, Length=223, Percent_Identity=30.9417040358744, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30117; Mature: 30117

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA