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The map label for this gene is yliC [C]

Identifier: 121610266

GI number: 121610266

Start: 3710502

End: 3711455

Strand: Direct

Name: yliC [C]

Synonym: Veis_3325

Alternate gene names: 121610266

Gene position: 3710502-3711455 (Clockwise)

Preceding gene: 121610265

Following gene: 121610267

Centisome position: 66.65

GC content: 67.71

Gene sequence:

>954_bases
ATGAAAAGTGCCTCGCTTCGCTACATCGCCGCGCGCGCGGGCGGCATGCTCGTCGTGCTGGCCATCGTGGCGGTGCTGGT
CTTTGTGCTCACGCGCGCCGCGTCGGGTGATCCGGTGTCGGTGCTGCTGGGCGACCAGGCCACGGCCGCCGACATCGCGC
GCGTGCAGAAGGAATACGGCCTCGACAAGCCGCTGCCCGTGCAGTTCGGCTACTGGCTGCGCGCAGTGCTGCAGGGCAAC
CTGGGCACCTCGATCTTCCTGCAGCGCCCGGTGACGCAGGCGCTGTGGGAGCGCGCCGAGCCCACCACGCTGCTGGCGCT
CATGGCCGTGGCCATCGCCGCGCTGATCGGCGTGCCCTGCGGCATCGTCTCGGCGGTGTTTCGCGGGCGCGTGGTCGACC
AGCTCTTCACCGGCATCGCGATGCTCGGCGCAAGCATTCCGAGCTTCTGGCTCGGCATCGTGCTGATCCAGGTCTTCGCG
GTGTCGTTCGGATGGTTCCCCGTGTCGGGCTACGGCGCGCCCGACGCGCCATTCATGGAGCGGCTGCATGCGCTGGTGCT
GCCGGCCACGGTGCTGGGCCTTCTGAACTCGGCGCTCATCATCCGCTTCACGCGCGCCTCGATGCTCGATGTGCTCGGCG
AAGACTATGTGCGCACCGCGCGCTCCAAGGGCCTCTCCGAGAGCAAGGTGGTGCTCAAGCATGCGCTGCGCAATGCGCTG
GTGCCCATCGTCACGGTGATCGGCCTGACGGTCGCGCTGATGATCGGCGGCGCCGTCATCACCGAGACGGTGTTCGGCCT
GCCGGGTGTCGGCAATCTCGTGGTGAGTGCGGTGCTGCGGCGCGACTACCCGGTGATCCAGGGTGCGCTGCTCGTGATCG
CCGCGATCTACGTGCTCATCAATTTCTCGATCGACCTGCTGTATGCGGTGGTCGATCCGCGCGTGAAGGTCTGA

Upstream 100 bases:

>100_bases
CGGGCCCGGTCTTTCGCGTGGACAAGGGCGGCATCCAGTTCAGCGGCCAGTACGTGGCCGTCGGCAGCGCCGCCGCCATC
GAGTTCTCGTCGTGATGAAG

Downstream 100 bases:

>100_bases
GCCGTGCAGATGCCCCGAATGCTCCGCCAACTGATGCACCGCCGCATCGTGATGGTCTCCGCGCTGGTGCTGCTGGTGAT
CGCGGTGCTCGCCATCGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKSASLRYIAARAGGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKPLPVQFGYWLRAVLQGN
LGTSIFLQRPVTQALWERAEPTTLLALMAVAIAALIGVPCGIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQVFA
VSFGWFPVSGYGAPDAPFMERLHALVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESKVVLKHALRNAL
VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVVDPRVKV

Sequences:

>Translated_317_residues
MKSASLRYIAARAGGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKPLPVQFGYWLRAVLQGN
LGTSIFLQRPVTQALWERAEPTTLLALMAVAIAALIGVPCGIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQVFA
VSFGWFPVSGYGAPDAPFMERLHALVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESKVVLKHALRNAL
VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVVDPRVKV
>Mature_317_residues
MKSASLRYIAARAGGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKPLPVQFGYWLRAVLQGN
LGTSIFLQRPVTQALWERAEPTTLLALMAVAIAALIGVPCGIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQVFA
VSFGWFPVSGYGAPDAPFMERLHALVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESKVVLKHALRNAL
VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFSIDLLYAVVDPRVKV

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=42.1221864951768, Blast_Score=253, Evalue=9e-69,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=38.3928571428571, Blast_Score=243, Evalue=8e-66,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=36.9426751592357, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787761, Length=325, Percent_Identity=39.0769230769231, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1787497, Length=313, Percent_Identity=31.629392971246, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787550, Length=266, Percent_Identity=29.3233082706767, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788504, Length=277, Percent_Identity=31.7689530685921, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33659; Mature: 33659

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSASLRYIAARAGGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYG
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC
LDKPLPVQFGYWLRAVLQGNLGTSIFLQRPVTQALWERAEPTTLLALMAVAIAALIGVPC
CCCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
GIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQVFAVSFGWFPVSGYGAPDAPFME
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHH
RLHALVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESKVVLKHALRNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFSIDLLYAVVDPRVKV
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKSASLRYIAARAGGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYG
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC
LDKPLPVQFGYWLRAVLQGNLGTSIFLQRPVTQALWERAEPTTLLALMAVAIAALIGVPC
CCCCCCCHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
GIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQVFAVSFGWFPVSGYGAPDAPFME
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHH
RLHALVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESKVVLKHALRNAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFSIDLLYAVVDPRVKV
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]