Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
---|---|
Accession | NC_008786 |
Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121610240
Identifier: 121610240
GI number: 121610240
Start: 3682578
End: 3683534
Strand: Direct
Name: 121610240
Synonym: Veis_3299
Alternate gene names: NA
Gene position: 3682578-3683534 (Clockwise)
Preceding gene: 121610239
Following gene: 121610241
Centisome position: 66.15
GC content: 61.02
Gene sequence:
>957_bases ATGACAATGAAACAAACGCTGGACATCTACGAACTCCTCGATGGTGCGGGTGTCGATGGCAAGGAAATCAAGGCCATGTT TGCCCCATTCGCCGCGCAAGGGGTCGAGGTCACGGTGACCACGGTAGCCAATGAAGAGGACGCCACCAGGACGACGGATT TCATTCGCATCCTCATCCCCGGTCGCAACGGCGCCACCTCCGGCGGCACTGCGCCAACCATCGGGCTGATTGGCCGTTGC GGTGCGATGGGCGCCCGCCCTCACCGGATTGGCCTGGTGTCCGACGCCGACGGTGTGTTGGCCGCGCTCGTCTGCGCGCT CAAACTGTCCCACATGAAGGCAAAGGGAGACGCCATCGAAGGCGACGCCTTGGTGACCACGCATTTGTCGCTTGACGCAT CCATCACGCCGCGTGAGCCGGTCGATTTCATGGGCATGCCGGTTTCCTCGGCGCTCATGAATCTCCATGAGGTCGATCCA GCGATGGATGCGATCCTGTCATTCGACACCAGCCGCGGCAACCGCATCATCAAGCAGCGCGGCTATGCGATTTCACCGAC CATCAAGGAAGGCTATATCCTGCGCGTCAGCAATGATCTGGTGTCAGTGATGGAAACGGTCTCAGGTCGGCCCGCCGTGA CCTTCCCGATCACGATGCAAGACATCACCCCTTACGACAACGGCCTCTACCATTTCAACAGCATCATGCAGCCCTGCGTT GCAACCAGTGCGCCAGTCGTCGGCGTGGCACTCATCGCGCAGGCCATCGTCGCCGGCAGCGACAGCGGCGCCAGCCAGGA AATCGACATCGCGGCGGCCGCCAGATTCGGCGTGGAGGTGGCCAAGCAATTCACCTGGGGACGCTGCGCATTTCACTCTG CCACCGAGTTCGCGCAGATGCGAAAAATGTACGGCCCCATGACGATTCTTCAAACCATGGGCAACCCGGGGGTGTAG
Upstream 100 bases:
>100_bases TGTTCAAGGAAGGAAACGAGCCGCGTGAGATCCATGCTGGCGACCTTTCCTTTTTGATGGCACGACAAATTGAAGCAACC CCGGGTACGAGAGGCACTGA
Downstream 100 bases:
>100_bases TGCTGCGTTGGATAAATTTCCCGTCCCCGGCAGTACTTTCCCCTGGTTTGGCTGTGCTCGGGTCAGGGATTTCGTGCAGG GCGCTGAGCATATGCGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTMKQTLDIYELLDGAGVDGKEIKAMFAPFAAQGVEVTVTTVANEEDATRTTDFIRILIPGRNGATSGGTAPTIGLIGRC GAMGARPHRIGLVSDADGVLAALVCALKLSHMKAKGDAIEGDALVTTHLSLDASITPREPVDFMGMPVSSALMNLHEVDP AMDAILSFDTSRGNRIIKQRGYAISPTIKEGYILRVSNDLVSVMETVSGRPAVTFPITMQDITPYDNGLYHFNSIMQPCV ATSAPVVGVALIAQAIVAGSDSGASQEIDIAAAARFGVEVAKQFTWGRCAFHSATEFAQMRKMYGPMTILQTMGNPGV
Sequences:
>Translated_318_residues MTMKQTLDIYELLDGAGVDGKEIKAMFAPFAAQGVEVTVTTVANEEDATRTTDFIRILIPGRNGATSGGTAPTIGLIGRC GAMGARPHRIGLVSDADGVLAALVCALKLSHMKAKGDAIEGDALVTTHLSLDASITPREPVDFMGMPVSSALMNLHEVDP AMDAILSFDTSRGNRIIKQRGYAISPTIKEGYILRVSNDLVSVMETVSGRPAVTFPITMQDITPYDNGLYHFNSIMQPCV ATSAPVVGVALIAQAIVAGSDSGASQEIDIAAAARFGVEVAKQFTWGRCAFHSATEFAQMRKMYGPMTILQTMGNPGV >Mature_317_residues TMKQTLDIYELLDGAGVDGKEIKAMFAPFAAQGVEVTVTTVANEEDATRTTDFIRILIPGRNGATSGGTAPTIGLIGRCG AMGARPHRIGLVSDADGVLAALVCALKLSHMKAKGDAIEGDALVTTHLSLDASITPREPVDFMGMPVSSALMNLHEVDPA MDAILSFDTSRGNRIIKQRGYAISPTIKEGYILRVSNDLVSVMETVSGRPAVTFPITMQDITPYDNGLYHFNSIMQPCVA TSAPVVGVALIAQAIVAGSDSGASQEIDIAAAARFGVEVAKQFTWGRCAFHSATEFAQMRKMYGPMTILQTMGNPGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33611; Mature: 33480
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMKQTLDIYELLDGAGVDGKEIKAMFAPFAAQGVEVTVTTVANEEDATRTTDFIRILIP CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEEEE GRNGATSGGTAPTIGLIGRCGAMGARPHRIGLVSDADGVLAALVCALKLSHMKAKGDAIE CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC GDALVTTHLSLDASITPREPVDFMGMPVSSALMNLHEVDPAMDAILSFDTSRGNRIIKQR CCEEEEEEEEECCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHC GYAISPTIKEGYILRVSNDLVSVMETVSGRPAVTFPITMQDITPYDNGLYHFNSIMQPCV CCEECCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH ATSAPVVGVALIAQAIVAGSDSGASQEIDIAAAARFGVEVAKQFTWGRCAFHSATEFAQM HCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKMYGPMTILQTMGNPGV HHHHCHHHHHHHCCCCCC >Mature Secondary Structure TMKQTLDIYELLDGAGVDGKEIKAMFAPFAAQGVEVTVTTVANEEDATRTTDFIRILIP CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEEEEEEEE GRNGATSGGTAPTIGLIGRCGAMGARPHRIGLVSDADGVLAALVCALKLSHMKAKGDAIE CCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC GDALVTTHLSLDASITPREPVDFMGMPVSSALMNLHEVDPAMDAILSFDTSRGNRIIKQR CCEEEEEEEEECCCCCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHC GYAISPTIKEGYILRVSNDLVSVMETVSGRPAVTFPITMQDITPYDNGLYHFNSIMQPCV CCEECCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH ATSAPVVGVALIAQAIVAGSDSGASQEIDIAAAARFGVEVAKQFTWGRCAFHSATEFAQM HCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKMYGPMTILQTMGNPGV HHHHCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA