Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
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Accession | NC_008786 |
Length | 5,566,749 |
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The map label for this gene is 121610237
Identifier: 121610237
GI number: 121610237
Start: 3679027
End: 3680601
Strand: Direct
Name: 121610237
Synonym: Veis_3296
Alternate gene names: NA
Gene position: 3679027-3680601 (Clockwise)
Preceding gene: 121610236
Following gene: 121610238
Centisome position: 66.09
GC content: 58.16
Gene sequence:
>1575_bases ATGCTTGCCCAGACGCCTGCGATATCCGAGCAAAAGCACCCGCGTGTGCTCGAACCCTTGATGCTCGTGGTTCTCATCAT GGTCTCCATCCTTGGTTCGGTGGTCGGTATCCAGATGATTGTTACGCTGGGCATCTCTGCCAATACCTCGATCATTGGCG CCTTGATTGCCATCATCATTTCTCGCATACCCATCGCGCTGCTCAGGAGATTTCGCTCGGTGCATCGCCAAAACCAGGTT CAGACAGCCATTTCCTCGGCCACTTTCGGCGCGGCCAACAGTCTGTTCATTCCTATCGGGGTTCCGTTTGCCATGGGGCG TCCCGAATTGATCATGCCCATGCTGATCGGGGCAACACTGGCGATGTTTCTGGATGGCGTGATGCTTTACCGAATGTTCG GTTCCAAGGTTTTTCCTGCCAGCGGCACCTGGCCGGCGGGTGTGGCGACAGCGGAATCGATCATCGCAGGCGACCAGGGT GGCAAAAAGGCCATGATGCTTGGCGGGGGCTTGCTGGTTGGTGTGCTGGGGTCCATGCTTCATATACCGATGTCGGCGCT GGGCGTCGCTTTCATCGGCAATATGTGGGCACTGCTGATGTTTGGCATCGGTCTTCTGATTCGGGGCTACGCCACCCCGG TGCTCGGAATGGATATCAACAAGCTGTTCATCCCGCACGGCATCATGATCGGCGCGGGCATCGTGGCCTTGGTGCAAGTG AGCGCATCGGTCATGAAAAACAAGGGCAAGCATGCGGTCGTTGAAGAGGATCGCAAAATCGTCAGCGTGTTGGGACAGGG GTTTGTCGCGTTTCTGCTGGTCTCGCTCATCGCTGCCCTGGTCGCCGGACTCGCCGCCGAGATGAGCTTGCCCATGTTTC TGGGATTTTTGCTGTTTGCGGCATTTGCGGCCTATGTGCATGAATTGATCGTCGGTATTGCGGCGATGCATGCCGGCTGG TTTCCTGCCTTTGCGGTTGCGCTCATCACCCTGATCATCGGCATCCTGATCGGCTTTCCGCCTGCGGCACTGGCGATTCT GGTCGGCTTGAGTGCCTCCACCGGACCGGCCTTTGCCGACATGGGCTATGACCTGAAAACAGGCTACCTGCTGCGCGGCG AGGGAAGAGACCCTGAACTGGAACGTGAAGGGCGCCGTCAGCAACTGATTGCCGGGATGATCGGTTTCGCTGTTTCGGCC CTGTGCGTCCTGCTTGTCTATGACAATTTCTTTGCCCGCAACCTCTTCCCGCCGGTCGGCAAAGTGTATGCGGCGACGAT CGCCGCCGGGGTTTCCAAAGAGATCGCCATGAATCTTCTGATCTGGGCCATTCCCGGTGCCCTGCTGCAATGGGTTGGAG GCGCCAAGCGCCAGCTTGGCGTGCTGATGGCAACCGGCTTGTTGATCAATGTGCCGGCTGCTGGCTGGGCAGTGTTGGCC GGATTGTTGCTGCGCCTGTTTATCGTGCGCAGGTACAAGAACGCCGGGGAAACCGCCTGCAACACCATGGCGGCCGGGTT CATTGCGGGCGATGCGCTCTACAACTTCTTCAAGCCGATCTTCATCAGCAAATGA
Upstream 100 bases:
>100_bases CCCTTACACACAACTTCCCTCCGCTTCCTGAAGCATGTTCCATTTCAAAGAACGTAGTCCATGACATAGGGACATACGAG AAAACAGCCAGGAAAATACC
Downstream 100 bases:
>100_bases TTCGACCCAGAGGACCTGCACAATATGAATCTCGACACCATCAGAAACGATCTTTGCCTCGACCCCGGCATCGCCTACCT CGACAATGCGGCGGCCTCTG
Product: oligopeptide transporter OPT superfamily protein
Products: NA
Alternate protein names: Oligopeptide Transporter
Number of amino acids: Translated: 524; Mature: 524
Protein sequence:
>524_residues MLAQTPAISEQKHPRVLEPLMLVVLIMVSILGSVVGIQMIVTLGISANTSIIGALIAIIISRIPIALLRRFRSVHRQNQV QTAISSATFGAANSLFIPIGVPFAMGRPELIMPMLIGATLAMFLDGVMLYRMFGSKVFPASGTWPAGVATAESIIAGDQG GKKAMMLGGGLLVGVLGSMLHIPMSALGVAFIGNMWALLMFGIGLLIRGYATPVLGMDINKLFIPHGIMIGAGIVALVQV SASVMKNKGKHAVVEEDRKIVSVLGQGFVAFLLVSLIAALVAGLAAEMSLPMFLGFLLFAAFAAYVHELIVGIAAMHAGW FPAFAVALITLIIGILIGFPPAALAILVGLSASTGPAFADMGYDLKTGYLLRGEGRDPELEREGRRQQLIAGMIGFAVSA LCVLLVYDNFFARNLFPPVGKVYAATIAAGVSKEIAMNLLIWAIPGALLQWVGGAKRQLGVLMATGLLINVPAAGWAVLA GLLLRLFIVRRYKNAGETACNTMAAGFIAGDALYNFFKPIFISK
Sequences:
>Translated_524_residues MLAQTPAISEQKHPRVLEPLMLVVLIMVSILGSVVGIQMIVTLGISANTSIIGALIAIIISRIPIALLRRFRSVHRQNQV QTAISSATFGAANSLFIPIGVPFAMGRPELIMPMLIGATLAMFLDGVMLYRMFGSKVFPASGTWPAGVATAESIIAGDQG GKKAMMLGGGLLVGVLGSMLHIPMSALGVAFIGNMWALLMFGIGLLIRGYATPVLGMDINKLFIPHGIMIGAGIVALVQV SASVMKNKGKHAVVEEDRKIVSVLGQGFVAFLLVSLIAALVAGLAAEMSLPMFLGFLLFAAFAAYVHELIVGIAAMHAGW FPAFAVALITLIIGILIGFPPAALAILVGLSASTGPAFADMGYDLKTGYLLRGEGRDPELEREGRRQQLIAGMIGFAVSA LCVLLVYDNFFARNLFPPVGKVYAATIAAGVSKEIAMNLLIWAIPGALLQWVGGAKRQLGVLMATGLLINVPAAGWAVLA GLLLRLFIVRRYKNAGETACNTMAAGFIAGDALYNFFKPIFISK >Mature_524_residues MLAQTPAISEQKHPRVLEPLMLVVLIMVSILGSVVGIQMIVTLGISANTSIIGALIAIIISRIPIALLRRFRSVHRQNQV QTAISSATFGAANSLFIPIGVPFAMGRPELIMPMLIGATLAMFLDGVMLYRMFGSKVFPASGTWPAGVATAESIIAGDQG GKKAMMLGGGLLVGVLGSMLHIPMSALGVAFIGNMWALLMFGIGLLIRGYATPVLGMDINKLFIPHGIMIGAGIVALVQV SASVMKNKGKHAVVEEDRKIVSVLGQGFVAFLLVSLIAALVAGLAAEMSLPMFLGFLLFAAFAAYVHELIVGIAAMHAGW FPAFAVALITLIIGILIGFPPAALAILVGLSASTGPAFADMGYDLKTGYLLRGEGRDPELEREGRRQQLIAGMIGFAVSA LCVLLVYDNFFARNLFPPVGKVYAATIAAGVSKEIAMNLLIWAIPGALLQWVGGAKRQLGVLMATGLLINVPAAGWAVLA GLLLRLFIVRRYKNAGETACNTMAAGFIAGDALYNFFKPIFISK
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55199; Mature: 55199
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAQTPAISEQKHPRVLEPLMLVVLIMVSILGSVVGIQMIVTLGISANTSIIGALIAIII CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH SRIPIALLRRFRSVHRQNQVQTAISSATFGAANSLFIPIGVPFAMGRPELIMPMLIGATL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH AMFLDGVMLYRMFGSKVFPASGTWPAGVATAESIIAGDQGGKKAMMLGGGLLVGVLGSML HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH HIPMSALGVAFIGNMWALLMFGIGLLIRGYATPVLGMDINKLFIPHGIMIGAGIVALVQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHH SASVMKNKGKHAVVEEDRKIVSVLGQGFVAFLLVSLIAALVAGLAAEMSLPMFLGFLLFA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAAYVHELIVGIAAMHAGWFPAFAVALITLIIGILIGFPPAALAILVGLSASTGPAFAD HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH MGYDLKTGYLLRGEGRDPELEREGRRQQLIAGMIGFAVSALCVLLVYDNFFARNLFPPVG CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH KVYAATIAAGVSKEIAMNLLIWAIPGALLQWVGGAKRQLGVLMATGLLINVPAAGWAVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHEECCCHHHHHHH GLLLRLFIVRRYKNAGETACNTMAAGFIAGDALYNFFKPIFISK HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLAQTPAISEQKHPRVLEPLMLVVLIMVSILGSVVGIQMIVTLGISANTSIIGALIAIII CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH SRIPIALLRRFRSVHRQNQVQTAISSATFGAANSLFIPIGVPFAMGRPELIMPMLIGATL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH AMFLDGVMLYRMFGSKVFPASGTWPAGVATAESIIAGDQGGKKAMMLGGGLLVGVLGSML HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH HIPMSALGVAFIGNMWALLMFGIGLLIRGYATPVLGMDINKLFIPHGIMIGAGIVALVQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHH SASVMKNKGKHAVVEEDRKIVSVLGQGFVAFLLVSLIAALVAGLAAEMSLPMFLGFLLFA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAAYVHELIVGIAAMHAGWFPAFAVALITLIIGILIGFPPAALAILVGLSASTGPAFAD HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHH MGYDLKTGYLLRGEGRDPELEREGRRQQLIAGMIGFAVSALCVLLVYDNFFARNLFPPVG CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH KVYAATIAAGVSKEIAMNLLIWAIPGALLQWVGGAKRQLGVLMATGLLINVPAAGWAVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHEECCCHHHHHHH GLLLRLFIVRRYKNAGETACNTMAAGFIAGDALYNFFKPIFISK HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA