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The map label for this gene is rbsC [H]

Identifier: 121610233

GI number: 121610233

Start: 3672884

End: 3675004

Strand: Direct

Name: rbsC [H]

Synonym: Veis_3292

Alternate gene names: 121610233

Gene position: 3672884-3675004 (Clockwise)

Preceding gene: 121610232

Following gene: 121610234

Centisome position: 65.98

GC content: 64.45

Gene sequence:

>2121_bases
GTGGCCTCCGAAAGCAATTGGGTCGCGCTCAGGTATCGGCTGGTCCCCGATCATCTGATCGGCGAGATTCTGTCCAAGAA
ATGGATAGACAACGCCATCGCCCTGCTGGTCATGGTCTGCGTCGTCGTGGTCTTCGGCCAGCTGATTCCCGAGTTCTTTA
CGGCCGGCAACCTGCAGACGACATCGCGGCAGTTCGGTGAATTCGCGCTGGTGTGCCTGGCGATGATGATCGTCGTCATC
GTCGGCGGCATCGACCTGAGCGTGGGCTCGAACTTTGCGCTCGGCAACTTCCTGACGCTGGCATTGCTGAACCTGGCCAA
TCTGCCGCTGCCGGCGGTCATTCCGATCGTGATGCTGGTCTGCGCTGCGGTGGGCCTGGTCAACGGCGTGCTGATCGGTT
ACTTGCGCCTGCGCGCATTCCTGACGACCTTGGTCACCCTGATCATCGTGCGCGCGATCGTCGACATGCTGCTGCTGCGC
TATGCGCAAGACATGTCGGTCGGGTTCTTTGAATCGGACCTGTGGGATCTGATGGGCTTGGGGCATATCGCCGGACTGCC
TTTCAGCTTCGTGGTGCTGGCGGCGGTCGCCGTGGTCGGCCATATTGCGCTGACGCGCAGCCGGCCCGGCTGGCGGGCAA
TGGCCATCGGTGGCTCGCGCCGTTCTGCGCACAACATCGGCTTGCCGGTGCGCGCAACGGTGTGCGGGGCCTATGTGATC
TCCGGCATGCTGTGCGGGATGGGCGGCATCCTCTATGCGGCCAGGCTCAGCGGCGCAGGCACCGACACCGGCATGGGGCT
GGAGATATCGGCCCTGACCGCCGTGGTGCTGGGCGGCAACAGCCTGGGCGGAGGGCGCGGCTCCGTGGTCAAGGCGCTGA
TCGGCGCGGTCACGGTGCTGATTTTGACCAACGGGGTGCTGCGCATCGGCCTGAACAGCGGTTCCGGCCCGATGGTTCTG
GGCTTGACCTTGCTCTTTGCCGTGTTCATCGATGTCAGATGGCTCAAGCACCGCGACAAGCTGCTGTCCAAGCTCTACGT
CTCGCCGACCTATATTGCGCTCCGACCGCCGCGCCCGATTGCTGCCGGTTCCGGCTCGCCGCTGGCTTTGAACGATCGCC
TGTCGGGTGTGCAAACCATCGGCCTGGGCGTTGTCGAGTCGCCCGAGGATGTGATCCTCGACGATGACGACTTCCTGTAC
TGCGGCACGCGCCACGGCGACATCGTGCGTTTTACGCCCCCCGGCTACCAGCACTCGGAGGTCTTCGCCCATATCGGCGG
AACGCCGCTGGGGATGACGTTCGACAAGGAGCGCAACCTGCTCGTCTGTGTCGGCGGCATGGGCCTGTACCGGATCGGGG
TCGATCGCAAGCTGTCCAAGCTCACGGACGAGACCAACCGGTCTGCGTTCTCCGTGATCGACGATTCGCGGCTGCGCTTG
GCCGATGACCTGGACATTGCGCCCGACGGGCGGGTCTTCTTCAGCGAGGCAACGATCCGCTACGAGATGCACGACTGGCC
CGTGGATGCGCTGGAAAGCCGCGGCAACGGACGGATCATCTGCTACGACCCGCGCTCCGGCAAAACGCAGACCGTGGTGC
GCAACCTGGTGTTTCCGAACGGCGTGTGCCTGGCGCACGATGGGCAGTCCATGCTTTTCGCCGAGAGTTGGGCCTGCACG
ATCAGCCGGTACTGGATCAGCGGCCCGAAGGCCGGCCGCACGGAATGTCTGATCGACAGGCTGCCGGGCTACCCGGACAA
CATCAACCGTGCCTCTGACGGTACCTACTGGGTCGCGCTGATGGGGATGCGCTCGCCCGCGCTGGATGTCGCGTTGCGCA
TGCCGGGCTTCAGGCGCCGGATGGCCAGGCGCATCGCGCCGGACCAGTGGCTGTATCCGAACCTGAACATCGGCTGCGTC
GCGCGCTTCGACGACCAGGGGAACATCCTGGAGTCGATGTGGGATCAGGGAGCGAAGAACCATCCGATGATCACCTCGAT
GCGCGAGCACAAGGGCTGGCTGTATCTGGGCGGGATCACGAACAACCGGATCGGGCGGGTGCGCCTGGAGCGGGCAGACC
CAGGCTGGAGCAGCTATCAGAGCTACTGGGGCAGGCAATGA

Upstream 100 bases:

>100_bases
AGAGCGAGGTAAAGGACGGAACCTGCTTCGATCCGACCGTGTACGCCAAACTCTTGCGCTGAACCCGGCCTGATCGATCA
CCGCGTCGGGAGAACATGCC

Downstream 100 bases:

>100_bases
AAAGCGGGGCGTTCCGGGACTTCATCGACCACCTGCTGGGGCGGGGCCGGTCCGCCGTCACGGTGCCGCCGCTCGATGGG
GCGTTCAAGCCGAACAACCG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 705

Protein sequence:

>706_residues
MASESNWVALRYRLVPDHLIGEILSKKWIDNAIALLVMVCVVVVFGQLIPEFFTAGNLQTTSRQFGEFALVCLAMMIVVI
VGGIDLSVGSNFALGNFLTLALLNLANLPLPAVIPIVMLVCAAVGLVNGVLIGYLRLRAFLTTLVTLIIVRAIVDMLLLR
YAQDMSVGFFESDLWDLMGLGHIAGLPFSFVVLAAVAVVGHIALTRSRPGWRAMAIGGSRRSAHNIGLPVRATVCGAYVI
SGMLCGMGGILYAARLSGAGTDTGMGLEISALTAVVLGGNSLGGGRGSVVKALIGAVTVLILTNGVLRIGLNSGSGPMVL
GLTLLFAVFIDVRWLKHRDKLLSKLYVSPTYIALRPPRPIAAGSGSPLALNDRLSGVQTIGLGVVESPEDVILDDDDFLY
CGTRHGDIVRFTPPGYQHSEVFAHIGGTPLGMTFDKERNLLVCVGGMGLYRIGVDRKLSKLTDETNRSAFSVIDDSRLRL
ADDLDIAPDGRVFFSEATIRYEMHDWPVDALESRGNGRIICYDPRSGKTQTVVRNLVFPNGVCLAHDGQSMLFAESWACT
ISRYWISGPKAGRTECLIDRLPGYPDNINRASDGTYWVALMGMRSPALDVALRMPGFRRRMARRIAPDQWLYPNLNIGCV
ARFDDQGNILESMWDQGAKNHPMITSMREHKGWLYLGGITNNRIGRVRLERADPGWSSYQSYWGRQ

Sequences:

>Translated_706_residues
MASESNWVALRYRLVPDHLIGEILSKKWIDNAIALLVMVCVVVVFGQLIPEFFTAGNLQTTSRQFGEFALVCLAMMIVVI
VGGIDLSVGSNFALGNFLTLALLNLANLPLPAVIPIVMLVCAAVGLVNGVLIGYLRLRAFLTTLVTLIIVRAIVDMLLLR
YAQDMSVGFFESDLWDLMGLGHIAGLPFSFVVLAAVAVVGHIALTRSRPGWRAMAIGGSRRSAHNIGLPVRATVCGAYVI
SGMLCGMGGILYAARLSGAGTDTGMGLEISALTAVVLGGNSLGGGRGSVVKALIGAVTVLILTNGVLRIGLNSGSGPMVL
GLTLLFAVFIDVRWLKHRDKLLSKLYVSPTYIALRPPRPIAAGSGSPLALNDRLSGVQTIGLGVVESPEDVILDDDDFLY
CGTRHGDIVRFTPPGYQHSEVFAHIGGTPLGMTFDKERNLLVCVGGMGLYRIGVDRKLSKLTDETNRSAFSVIDDSRLRL
ADDLDIAPDGRVFFSEATIRYEMHDWPVDALESRGNGRIICYDPRSGKTQTVVRNLVFPNGVCLAHDGQSMLFAESWACT
ISRYWISGPKAGRTECLIDRLPGYPDNINRASDGTYWVALMGMRSPALDVALRMPGFRRRMARRIAPDQWLYPNLNIGCV
ARFDDQGNILESMWDQGAKNHPMITSMREHKGWLYLGGITNNRIGRVRLERADPGWSSYQSYWGRQ
>Mature_705_residues
ASESNWVALRYRLVPDHLIGEILSKKWIDNAIALLVMVCVVVVFGQLIPEFFTAGNLQTTSRQFGEFALVCLAMMIVVIV
GGIDLSVGSNFALGNFLTLALLNLANLPLPAVIPIVMLVCAAVGLVNGVLIGYLRLRAFLTTLVTLIIVRAIVDMLLLRY
AQDMSVGFFESDLWDLMGLGHIAGLPFSFVVLAAVAVVGHIALTRSRPGWRAMAIGGSRRSAHNIGLPVRATVCGAYVIS
GMLCGMGGILYAARLSGAGTDTGMGLEISALTAVVLGGNSLGGGRGSVVKALIGAVTVLILTNGVLRIGLNSGSGPMVLG
LTLLFAVFIDVRWLKHRDKLLSKLYVSPTYIALRPPRPIAAGSGSPLALNDRLSGVQTIGLGVVESPEDVILDDDDFLYC
GTRHGDIVRFTPPGYQHSEVFAHIGGTPLGMTFDKERNLLVCVGGMGLYRIGVDRKLSKLTDETNRSAFSVIDDSRLRLA
DDLDIAPDGRVFFSEATIRYEMHDWPVDALESRGNGRIICYDPRSGKTQTVVRNLVFPNGVCLAHDGQSMLFAESWACTI
SRYWISGPKAGRTECLIDRLPGYPDNINRASDGTYWVALMGMRSPALDVALRMPGFRRRMARRIAPDQWLYPNLNIGCVA
RFDDQGNILESMWDQGAKNHPMITSMREHKGWLYLGGITNNRIGRVRLERADPGWSSYQSYWGRQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG3386

COG function: function code G; Gluconolactonase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Homo sapiens, GI24308201, Length=362, Percent_Identity=24.585635359116, Blast_Score=106, Evalue=8e-23,
Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=30.7443365695793, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=29.8657718120805, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=29.2604501607717, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082395, Length=230, Percent_Identity=31.7391304347826, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=28.6644951140065, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI145693214, Length=245, Percent_Identity=32.6530612244898, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI1787794, Length=309, Percent_Identity=27.831715210356, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=29.5031055900621, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=34.0909090909091, Blast_Score=63, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193207213, Length=333, Percent_Identity=25.8258258258258, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17542364, Length=357, Percent_Identity=26.6106442577031, Blast_Score=116, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17534469, Length=365, Percent_Identity=26.027397260274, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17137194, Length=422, Percent_Identity=23.4597156398104, Blast_Score=100, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24650914, Length=395, Percent_Identity=26.0759493670886, Blast_Score=90, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 76800; Mature: 76669

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASESNWVALRYRLVPDHLIGEILSKKWIDNAIALLVMVCVVVVFGQLIPEFFTAGNLQT
CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
TSRQFGEFALVCLAMMIVVIVGGIDLSVGSNFALGNFLTLALLNLANLPLPAVIPIVMLV
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
CAAVGLVNGVLIGYLRLRAFLTTLVTLIIVRAIVDMLLLRYAQDMSVGFFESDLWDLMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GHIAGLPFSFVVLAAVAVVGHIALTRSRPGWRAMAIGGSRRSAHNIGLPVRATVCGAYVI
HHHHCCCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
SGMLCGMGGILYAARLSGAGTDTGMGLEISALTAVVLGGNSLGGGRGSVVKALIGAVTVL
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHH
ILTNGVLRIGLNSGSGPMVLGLTLLFAVFIDVRWLKHRDKLLSKLYVSPTYIALRPPRPI
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
AAGSGSPLALNDRLSGVQTIGLGVVESPEDVILDDDDFLYCGTRHGDIVRFTPPGYQHSE
CCCCCCCEEECCCCCCCCEECCCEECCCCCCEECCCCEEEEECCCCCEEEECCCCCCCHH
VFAHIGGTPLGMTFDKERNLLVCVGGMGLYRIGVDRKLSKLTDETNRSAFSVIDDSRLRL
HHHCCCCCCCCCEECCCCCEEEEECCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCEEE
ADDLDIAPDGRVFFSEATIRYEMHDWPVDALESRGNGRIICYDPRSGKTQTVVRNLVFPN
ECCCCCCCCCCEEEECEEEEEEECCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCC
GVCLAHDGQSMLFAESWACTISRYWISGPKAGRTECLIDRLPGYPDNINRASDGTYWVAL
CEEEEECCCCEEEEHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE
MGMRSPALDVALRMPGFRRRMARRIAPDQWLYPNLNIGCVARFDDQGNILESMWDQGAKN
EECCCCHHHHEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCC
HPMITSMREHKGWLYLGGITNNRIGRVRLERADPGWSSYQSYWGRQ
CCCEEEHHHCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHCCCC
>Mature Secondary Structure 
ASESNWVALRYRLVPDHLIGEILSKKWIDNAIALLVMVCVVVVFGQLIPEFFTAGNLQT
CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
TSRQFGEFALVCLAMMIVVIVGGIDLSVGSNFALGNFLTLALLNLANLPLPAVIPIVMLV
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
CAAVGLVNGVLIGYLRLRAFLTTLVTLIIVRAIVDMLLLRYAQDMSVGFFESDLWDLMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GHIAGLPFSFVVLAAVAVVGHIALTRSRPGWRAMAIGGSRRSAHNIGLPVRATVCGAYVI
HHHHCCCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
SGMLCGMGGILYAARLSGAGTDTGMGLEISALTAVVLGGNSLGGGRGSVVKALIGAVTVL
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHH
ILTNGVLRIGLNSGSGPMVLGLTLLFAVFIDVRWLKHRDKLLSKLYVSPTYIALRPPRPI
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
AAGSGSPLALNDRLSGVQTIGLGVVESPEDVILDDDDFLYCGTRHGDIVRFTPPGYQHSE
CCCCCCCEEECCCCCCCCEECCCEECCCCCCEECCCCEEEEECCCCCEEEECCCCCCCHH
VFAHIGGTPLGMTFDKERNLLVCVGGMGLYRIGVDRKLSKLTDETNRSAFSVIDDSRLRL
HHHCCCCCCCCCEECCCCCEEEEECCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCEEE
ADDLDIAPDGRVFFSEATIRYEMHDWPVDALESRGNGRIICYDPRSGKTQTVVRNLVFPN
ECCCCCCCCCCEEEECEEEEEEECCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCC
GVCLAHDGQSMLFAESWACTISRYWISGPKAGRTECLIDRLPGYPDNINRASDGTYWVAL
CEEEEECCCCEEEEHHHHHEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE
MGMRSPALDVALRMPGFRRRMARRIAPDQWLYPNLNIGCVARFDDQGNILESMWDQGAKN
EECCCCHHHHEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCC
HPMITSMREHKGWLYLGGITNNRIGRVRLERADPGWSSYQSYWGRQ
CCCEEEHHHCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]