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The map label for this gene is rbsB [H]

Identifier: 121610232

GI number: 121610232

Start: 3671820

End: 3672845

Strand: Direct

Name: rbsB [H]

Synonym: Veis_3291

Alternate gene names: 121610232

Gene position: 3671820-3672845 (Clockwise)

Preceding gene: 121610231

Following gene: 121610233

Centisome position: 65.96

GC content: 62.48

Gene sequence:

>1026_bases
ATGCACCCGACTTTCCGGAAACTGATGGCCACCGCCGTGATCGGCATGACGCTGGGTGCGGGCAGCGCCTGGGCGCAAAA
GGAGATGAACGATCCGTTCCGTGAGCCGGCGCTGGCAGCGCTGCGCGGCAAGACCATCGCCTATCTGCCGATCTCCCTCG
GCTTTGACCTGGCACAGGCCTGGGGCGGGGTCATCAAGCAAGAGGCCGACCGCTATGGCATGAAATTCATTTCCCAGGAT
CCGAACTGGTCGACGGACGCAATGGCGCAGGGCATGACCTCATTGATCGCACAAAAACCCGATGTGATCGTGACCCAGAA
CCCGGACCTGCAGTCGCTCGCGCGCCTGCTCAAGCAGGCCAACGCGGCCGGCATCCATGTGATTCAGATGAACATGCAGG
GCGCCGTGCAGACCGACGCCTTCGTCGGGCCTGACTTCATCGCGCTGGGCCAGCAGGTGGCCCACATGATGGTCAAAGCC
TGTGGCAAGGGGACCAACACCTCGCACAAAATCTCCATCGTCCAGGGCGTGGTGACCGGCGGTGTCAGCTACTACCAGGT
GCAAGGCATCAAGAAAGTGCTGGCCGAAAACCCGGACCTCAAGCTGGTCTCCAGCCAGGCCGCAGACTGGGATGCGACCA
AGGCGCGGGCGATCACCGAAACCGTGCTGCAACAAAACCCGGACCTGTGCGGCGTGATCGATGTCTGGGACGGTCAGGCC
GCAGGCACCGGTGCGGCGATCGTGCAGGCGGGCAAGAAGGGCAAGGTCTACTTCGTGACCTCCGGCGGCGGCGCGCAAAG
CACATGCGATCGACTCAATGACGGCATCTTCTCGGCCGTCATCAACTACGACGCGGTGGGCATGGGGCGTGACGCCTTCA
CGGCCATCAGCGCATTGCTGCAAACCAAGGCAAAGGCGGGCACCCTGAAGTTCCAGTTGTACTCGCCAACGCGCGTGCTG
ACCAAGAGCGAGGTAAAGGACGGAACCTGCTTCGATCCGACCGTGTACGCCAAACTCTTGCGCTGA

Upstream 100 bases:

>100_bases
CGATGAGCAAACCGGGCAGCAGGGCGATATCTGAGCCTTGCGCTGATCCATTCCGGCTTCCATTCCCGCTTTCGACGACT
TTCAACAAGGAGACACCAGC

Downstream 100 bases:

>100_bases
ACCCGGCCTGATCGATCACCGCGTCGGGAGAACATGCCGTGGCCTCCGAAAGCAATTGGGTCGCGCTCAGGTATCGGCTG
GTCCCCGATCATCTGATCGG

Product: ABC transporter substrate-binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MHPTFRKLMATAVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQAWGGVIKQEADRYGMKFISQD
PNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQANAAGIHVIQMNMQGAVQTDAFVGPDFIALGQQVAHMMVKA
CGKGTNTSHKISIVQGVVTGGVSYYQVQGIKKVLAENPDLKLVSSQAADWDATKARAITETVLQQNPDLCGVIDVWDGQA
AGTGAAIVQAGKKGKVYFVTSGGGAQSTCDRLNDGIFSAVINYDAVGMGRDAFTAISALLQTKAKAGTLKFQLYSPTRVL
TKSEVKDGTCFDPTVYAKLLR

Sequences:

>Translated_341_residues
MHPTFRKLMATAVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQAWGGVIKQEADRYGMKFISQD
PNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQANAAGIHVIQMNMQGAVQTDAFVGPDFIALGQQVAHMMVKA
CGKGTNTSHKISIVQGVVTGGVSYYQVQGIKKVLAENPDLKLVSSQAADWDATKARAITETVLQQNPDLCGVIDVWDGQA
AGTGAAIVQAGKKGKVYFVTSGGGAQSTCDRLNDGIFSAVINYDAVGMGRDAFTAISALLQTKAKAGTLKFQLYSPTRVL
TKSEVKDGTCFDPTVYAKLLR
>Mature_341_residues
MHPTFRKLMATAVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQAWGGVIKQEADRYGMKFISQD
PNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQANAAGIHVIQMNMQGAVQTDAFVGPDFIALGQQVAHMMVKA
CGKGTNTSHKISIVQGVVTGGVSYYQVQGIKKVLAENPDLKLVSSQAADWDATKARAITETVLQQNPDLCGVIDVWDGQA
AGTGAAIVQAGKKGKVYFVTSGGGAQSTCDRLNDGIFSAVINYDAVGMGRDAFTAISALLQTKAKAGTLKFQLYSPTRVL
TKSEVKDGTCFDPTVYAKLLR

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=127, Percent_Identity=30.7086614173228, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36306; Mature: 36306

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPTFRKLMATAVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHH
WGGVIKQEADRYGMKFISQDPNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC
NAAGIHVIQMNMQGAVQTDAFVGPDFIALGQQVAHMMVKACGKGTNTSHKISIVQGVVTG
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHC
GVSYYQVQGIKKVLAENPDLKLVSSQAADWDATKARAITETVLQQNPDLCGVIDVWDGQA
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
AGTGAAIVQAGKKGKVYFVTSGGGAQSTCDRLNDGIFSAVINYDAVGMGRDAFTAISALL
CCCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
QTKAKAGTLKFQLYSPTRVLTKSEVKDGTCFDPTVYAKLLR
HHHHCCCEEEEEEECCHHHHHHHCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MHPTFRKLMATAVIGMTLGAGSAWAQKEMNDPFREPALAALRGKTIAYLPISLGFDLAQA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHH
WGGVIKQEADRYGMKFISQDPNWSTDAMAQGMTSLIAQKPDVIVTQNPDLQSLARLLKQA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC
NAAGIHVIQMNMQGAVQTDAFVGPDFIALGQQVAHMMVKACGKGTNTSHKISIVQGVVTG
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHC
GVSYYQVQGIKKVLAENPDLKLVSSQAADWDATKARAITETVLQQNPDLCGVIDVWDGQA
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
AGTGAAIVQAGKKGKVYFVTSGGGAQSTCDRLNDGIFSAVINYDAVGMGRDAFTAISALL
CCCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
QTKAKAGTLKFQLYSPTRVLTKSEVKDGTCFDPTVYAKLLR
HHHHCCCEEEEEEECCHHHHHHHCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]