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The map label for this gene is rbsC [H]

Identifier: 121610231

GI number: 121610231

Start: 3670767

End: 3671753

Strand: Direct

Name: rbsC [H]

Synonym: Veis_3290

Alternate gene names: 121610231

Gene position: 3670767-3671753 (Clockwise)

Preceding gene: 121610230

Following gene: 121610232

Centisome position: 65.94

GC content: 62.41

Gene sequence:

>987_bases
ATGACGGCAACACGATTCGTTGGGCAGCTCAACCAAGAGAAGATCGTGTTCGGCCTGACGCTCTTGCTGTTCATCGGATT
CGCGTCCACGCTGCCGAATTTCCTCGCCGCGGCCAACATCTTGTCGTTGCTGCGCAGCGTTGCGGTGCTCGGCATGCTGG
GCTTGGGCATGCTGATCGTGGTGCTCGGGCGCGGGGTCGATCTCTCGCTCGTCGCCACGATGGCGATCTCGGTCGCGTGG
AGCGTGCAGTTGGTCCATCGCGGCGTCCCTGTGGGCCTTGCGTTGGCCATCGGATTGGCGCTGGCGCTCGTCGTCGGGCT
GGTGAATGGTCTGCTGGTGGCCTATGCGGAGATTCCGCCGCTCTTCGCAACGCTGGCGATGGGCACCCTGGTCTACGGGT
TTGGCCGGGCGCATCTGATCACCGGCACCGACGTGGTGTATGTGCCGCAGGGCATGGGATGGGTTCTTGCGCTCGGACAG
GGGGCGCTGCTGGGCGTGCCCATGCCCATCGTCATGGCAGCGCTGTGCGCGCTGGTCTGCTATCTCTTGCTTCGGTACAC
CAAGGCCGGCCAATTCGTCTTTGCCGTGGGGGACAACCTGAAAGCCGCCCGCATCGGGGCCATCGCCGTGCGGCCGATCC
TGACGCTGCAGTACGGCCTGTCCGGCGCCATCGCATTCTTTGCCGGGGTGATCACCGCAACCTCGGTGCAGGCGATGAAC
ACGCGGATCGTCAATTCCAACCTGATCTATGACGTCCTTTTGGTCGTGATTCTGGGCGGTGTCGGATTGAGTGGCGGCAA
GGGCAGTGTGCGCAACGTCATCGTTGGCACCTTGCTCATTGGCGTGCTGCTCAACGGGATGACGATCATGGACATCCAGT
ACACGGTCCAGAACGTCATCAAAAGCATGATCTTGCTGATCGCCATCGTGGCCGACAGCATCGTCAATCCCCGCGATGAG
CAAACCGGGCAGCAGGGCGATATCTGA

Upstream 100 bases:

>100_bases
GTCTGCACACACTAAATTCACGCCCTTACCAGCGCACTGGTCCATGGCGTGATCCCGGCGTTGCTGCTTGCAGCGGTTAT
CGACACAGAGGCAAGAAACC

Downstream 100 bases:

>100_bases
GCCTTGCGCTGATCCATTCCGGCTTCCATTCCCGCTTTCGACGACTTTCAACAAGGAGACACCAGCATGCACCCGACTTT
CCGGAAACTGATGGCCACCG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTATRFVGQLNQEKIVFGLTLLLFIGFASTLPNFLAAANILSLLRSVAVLGMLGLGMLIVVLGRGVDLSLVATMAISVAW
SVQLVHRGVPVGLALAIGLALALVVGLVNGLLVAYAEIPPLFATLAMGTLVYGFGRAHLITGTDVVYVPQGMGWVLALGQ
GALLGVPMPIVMAALCALVCYLLLRYTKAGQFVFAVGDNLKAARIGAIAVRPILTLQYGLSGAIAFFAGVITATSVQAMN
TRIVNSNLIYDVLLVVILGGVGLSGGKGSVRNVIVGTLLIGVLLNGMTIMDIQYTVQNVIKSMILLIAIVADSIVNPRDE
QTGQQGDI

Sequences:

>Translated_328_residues
MTATRFVGQLNQEKIVFGLTLLLFIGFASTLPNFLAAANILSLLRSVAVLGMLGLGMLIVVLGRGVDLSLVATMAISVAW
SVQLVHRGVPVGLALAIGLALALVVGLVNGLLVAYAEIPPLFATLAMGTLVYGFGRAHLITGTDVVYVPQGMGWVLALGQ
GALLGVPMPIVMAALCALVCYLLLRYTKAGQFVFAVGDNLKAARIGAIAVRPILTLQYGLSGAIAFFAGVITATSVQAMN
TRIVNSNLIYDVLLVVILGGVGLSGGKGSVRNVIVGTLLIGVLLNGMTIMDIQYTVQNVIKSMILLIAIVADSIVNPRDE
QTGQQGDI
>Mature_327_residues
TATRFVGQLNQEKIVFGLTLLLFIGFASTLPNFLAAANILSLLRSVAVLGMLGLGMLIVVLGRGVDLSLVATMAISVAWS
VQLVHRGVPVGLALAIGLALALVVGLVNGLLVAYAEIPPLFATLAMGTLVYGFGRAHLITGTDVVYVPQGMGWVLALGQG
ALLGVPMPIVMAALCALVCYLLLRYTKAGQFVFAVGDNLKAARIGAIAVRPILTLQYGLSGAIAFFAGVITATSVQAMNT
RIVNSNLIYDVLLVVILGGVGLSGGKGSVRNVIVGTLLIGVLLNGMTIMDIQYTVQNVIKSMILLIAIVADSIVNPRDEQ
TGQQGDI

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=30.4635761589404, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=29.6416938110749, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=31.2703583061889, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=35.3174603174603, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789992, Length=361, Percent_Identity=27.9778393351801, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=26.1904761904762, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=27, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34111; Mature: 33980

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATRFVGQLNQEKIVFGLTLLLFIGFASTLPNFLAAANILSLLRSVAVLGMLGLGMLIV
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGRGVDLSLVATMAISVAWSVQLVHRGVPVGLALAIGLALALVVGLVNGLLVAYAEIPP
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LFATLAMGTLVYGFGRAHLITGTDVVYVPQGMGWVLALGQGALLGVPMPIVMAALCALVC
HHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCEEEEECCCCEECCCHHHHHHHHHHHHH
YLLLRYTKAGQFVFAVGDNLKAARIGAIAVRPILTLQYGLSGAIAFFAGVITATSVQAMN
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
TRIVNSNLIYDVLLVVILGGVGLSGGKGSVRNVIVGTLLIGVLLNGMTIMDIQYTVQNVI
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
KSMILLIAIVADSIVNPRDEQTGQQGDI
HHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TATRFVGQLNQEKIVFGLTLLLFIGFASTLPNFLAAANILSLLRSVAVLGMLGLGMLIV
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLGRGVDLSLVATMAISVAWSVQLVHRGVPVGLALAIGLALALVVGLVNGLLVAYAEIPP
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LFATLAMGTLVYGFGRAHLITGTDVVYVPQGMGWVLALGQGALLGVPMPIVMAALCALVC
HHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCEEEEECCCCEECCCHHHHHHHHHHHHH
YLLLRYTKAGQFVFAVGDNLKAARIGAIAVRPILTLQYGLSGAIAFFAGVITATSVQAMN
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
TRIVNSNLIYDVLLVVILGGVGLSGGKGSVRNVIVGTLLIGVLLNGMTIMDIQYTVQNVI
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
KSMILLIAIVADSIVNPRDEQTGQQGDI
HHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]