Click here to switch to the map view.

The map label for this gene is potD [C]

Identifier: 121610131

GI number: 121610131

Start: 3557340

End: 3558452

Strand: Direct

Name: potD [C]

Synonym: Veis_3190

Alternate gene names: 121610131

Gene position: 3557340-3558452 (Clockwise)

Preceding gene: 121610130

Following gene: 121610132

Centisome position: 63.9

GC content: 61.73

Gene sequence:

>1113_bases
ATGGATAAGCACCACCCAAGTGACTGCATCGAGATTCTCATGGATCGTGCACGCGAGGGCAAAATCAGCCGCCGCCGTTT
CGTCAAGGCAATGGGCATGCTGGCGGTGCTGCCGGCCGCGATGCGGGCGGGAGTCGGCTTTGCGCAGGGCAAGCAGCTTG
TCGTGGTGAACTGGGGCGGCGATGCGATCGATGCGTACCGCAAATCCTGGGCGGATGAGTTCAGCCGCAGCAGTGGTATT
CCGGTGAAGATAGATGGCAGCGGTCCGACCGACGGCGCGATCCGGGCCCAGGCCGCAAGCGGCCGCCCGAGTTGGGACGT
GGTTGATGCCGAACCATATACCGCGCTGTCGCTCGGGCGAGCCGGCATCTGCCAGCCGCTCGACTACACGGTCATCGAGC
GCAACAAGGTGGCACCCGGTTTCGCCCACGACTATGGCATTGCGAGCTATCTCTTCAGCTATGTGATGGCATGGGACAGC
AGGAAATACGGTGCCAAGGGACCGCGCACATGGGCCGATTTCTGGAACGTCCAGGCTTTTCCGGGCAAGCGCACATTGTT
CAAATGGATGAACGGGATGCTGGAGGCGGCATTGCTCGCGGATGGCATCGCTCCATCGGCGCTGTATCCGCTGGACGTGC
CGCGCGCGCTGCGCAAGCTCGATGAATTAAAGCCGCACATTCTCGCGTACTGGGGCTCGGGGGCAGAAAGCCAGCAGTTG
ATGGTAAATGGCGATGTGTCGGTTGGTGCGATCTGGAATACGCGCGCGGGGCTGCTGGAGCAGGACTCCGATGGCCGCAT
CCAATGGGGCTACGACAATGCGTTCGTCACGCCGAGCTACTGGGCCGTACTGAAAAACAATCCGGCGGGTGCGCAGCCGG
CCATGCGGTTCATCGCATATGCACAGGATCCGAAAACGCAAGTCGAACTGTTCAAACTGACCGGCAACAGTCCGGCCAAT
CCGGCGGCGCGGGCGCTGATTCCCGCCGATCTGCGTGCGCGCGATTGCGGCTCGCCCGAGAACCTTGCCAAGCAGATTCG
TCTGAACGGTGATTGGTATGCGGACCACTATGCCGCCGCGCTCGAACAATATCTGAGACGGTTGGCCAAGTAG

Upstream 100 bases:

>100_bases
TGAGTTGGTGCCCGTCGAACAGCATTCTGCTCGCCGCTTGAGAGGACTGGCCACGAGTCCCGATGAACGCAACACAGCCA
TTTTCACAACGGAGCACCCA

Downstream 100 bases:

>100_bases
ATGGGTGATGAATGCCGTGAACTCCACCGCCTTCAAACGCGCATTGCTGATCGCACCGCTGCCGCTATTGCTGGCGCTGC
TCTATGGTTTGCCGCTGGCC

Product: polyamine ABC transporter periplasmic polyamine-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: None

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MDKHHPSDCIEILMDRAREGKISRRRFVKAMGMLAVLPAAMRAGVGFAQGKQLVVVNWGGDAIDAYRKSWADEFSRSSGI
PVKIDGSGPTDGAIRAQAASGRPSWDVVDAEPYTALSLGRAGICQPLDYTVIERNKVAPGFAHDYGIASYLFSYVMAWDS
RKYGAKGPRTWADFWNVQAFPGKRTLFKWMNGMLEAALLADGIAPSALYPLDVPRALRKLDELKPHILAYWGSGAESQQL
MVNGDVSVGAIWNTRAGLLEQDSDGRIQWGYDNAFVTPSYWAVLKNNPAGAQPAMRFIAYAQDPKTQVELFKLTGNSPAN
PAARALIPADLRARDCGSPENLAKQIRLNGDWYADHYAAALEQYLRRLAK

Sequences:

>Translated_370_residues
MDKHHPSDCIEILMDRAREGKISRRRFVKAMGMLAVLPAAMRAGVGFAQGKQLVVVNWGGDAIDAYRKSWADEFSRSSGI
PVKIDGSGPTDGAIRAQAASGRPSWDVVDAEPYTALSLGRAGICQPLDYTVIERNKVAPGFAHDYGIASYLFSYVMAWDS
RKYGAKGPRTWADFWNVQAFPGKRTLFKWMNGMLEAALLADGIAPSALYPLDVPRALRKLDELKPHILAYWGSGAESQQL
MVNGDVSVGAIWNTRAGLLEQDSDGRIQWGYDNAFVTPSYWAVLKNNPAGAQPAMRFIAYAQDPKTQVELFKLTGNSPAN
PAARALIPADLRARDCGSPENLAKQIRLNGDWYADHYAAALEQYLRRLAK
>Mature_370_residues
MDKHHPSDCIEILMDRAREGKISRRRFVKAMGMLAVLPAAMRAGVGFAQGKQLVVVNWGGDAIDAYRKSWADEFSRSSGI
PVKIDGSGPTDGAIRAQAASGRPSWDVVDAEPYTALSLGRAGICQPLDYTVIERNKVAPGFAHDYGIASYLFSYVMAWDS
RKYGAKGPRTWADFWNVQAFPGKRTLFKWMNGMLEAALLADGIAPSALYPLDVPRALRKLDELKPHILAYWGSGAESQQL
MVNGDVSVGAIWNTRAGLLEQDSDGRIQWGYDNAFVTPSYWAVLKNNPAGAQPAMRFIAYAQDPKTQVELFKLTGNSPAN
PAARALIPADLRARDCGSPENLAKQIRLNGDWYADHYAAALEQYLRRLAK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40696; Mature: 40696

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKHHPSDCIEILMDRAREGKISRRRFVKAMGMLAVLPAAMRAGVGFAQGKQLVVVNWGG
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCC
DAIDAYRKSWADEFSRSSGIPVKIDGSGPTDGAIRAQAASGRPSWDVVDAEPYTALSLGR
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHCCC
AGICQPLDYTVIERNKVAPGFAHDYGIASYLFSYVMAWDSRKYGAKGPRTWADFWNVQAF
CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
PGKRTLFKWMNGMLEAALLADGIAPSALYPLDVPRALRKLDELKPHILAYWGSGAESQQL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEE
MVNGDVSVGAIWNTRAGLLEQDSDGRIQWGYDNAFVTPSYWAVLKNNPAGAQPAMRFIAY
EEECCEEEEEEECCCCCCCCCCCCCCEEECCCCEEECCCEEEEEECCCCCHHHHHHHHHH
AQDPKTQVELFKLTGNSPANPAARALIPADLRARDCGSPENLAKQIRLNGDWYADHYAAA
CCCCCCEEEEEEECCCCCCCCHHHEECCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHH
LEQYLRRLAK
HHHHHHHHCC
>Mature Secondary Structure
MDKHHPSDCIEILMDRAREGKISRRRFVKAMGMLAVLPAAMRAGVGFAQGKQLVVVNWGG
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCC
DAIDAYRKSWADEFSRSSGIPVKIDGSGPTDGAIRAQAASGRPSWDVVDAEPYTALSLGR
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHCCC
AGICQPLDYTVIERNKVAPGFAHDYGIASYLFSYVMAWDSRKYGAKGPRTWADFWNVQAF
CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
PGKRTLFKWMNGMLEAALLADGIAPSALYPLDVPRALRKLDELKPHILAYWGSGAESQQL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEE
MVNGDVSVGAIWNTRAGLLEQDSDGRIQWGYDNAFVTPSYWAVLKNNPAGAQPAMRFIAY
EEECCEEEEEEECCCCCCCCCCCCCCEEECCCCEEECCCEEEEEECCCCCHHHHHHHHHH
AQDPKTQVELFKLTGNSPANPAARALIPADLRARDCGSPENLAKQIRLNGDWYADHYAAA
CCCCCCEEEEEEECCCCCCCCHHHEECCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHH
LEQYLRRLAK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA