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The map label for this gene is yeaM [H]

Identifier: 121639751

GI number: 121639751

Start: 4279269

End: 4280060

Strand: Direct

Name: yeaM [H]

Synonym: BCG_3896

Alternate gene names: 121639751

Gene position: 4279269-4280060 (Clockwise)

Preceding gene: 121639749

Following gene: 121639753

Centisome position: 97.82

GC content: 65.4

Gene sequence:

>792_bases
ATGTCGGAAAACAGCCACCACAGGCTGGCCACAACCTCGTTGACGCTCCCGCCGGGAGCGCGGATCGAACGCCACCGCCA
TCCGTCACACCAGATCGTCTATCCGTCCGCAGGGGCGGTCTCGGTCACCACTCACGCGGGAACCTGGATTACGCCGGTAA
ATCGGGCAATCTGGATACCGGCGGGCTGTTGGCACCAACACAAGTTCCACGGCCACACGCAATTTCACGGCGTAGCGCTG
GATCCGCAGCGCTATCGCGGCGGCCCGGCAACCCCGACGGTGCTCGCGGTCAATCCGTTGATGCGCGAACTCATCATCGC
GTGTTCGCAGGCCGACCGAACCGACACCGACGAGCACCACCGGATGTTGGCCGTACTGCAGGATCAACTGCCAACAACGA
GCATCCGCGAGCCACTGTGGGTTCCCTCACCAACCGATCGCCGGTTGCGGCACGCGTGCGCGTTGATCGCCGACAACCTG
ACCCAGCCCTTGACGCTGCAGCAGATCGGCGGCCGGATCGGTGTCAGCCAGCGCACGCTGAGCCGTCTGTTCAGCGACGA
GCTGGGTATGACGTTCCCGCAATGGCGCACCCAGCTGCGCCTGCAACATGCGCTCGTGTTGCTCGCCGAGCGCCACGACG
TCACGTCCGTGGCGTCCGAATGCGGTTGGGCCACACCAAGCGCGTTCATTGACACCTACCGACAAGCCTTCGGACACACT
CCCGGCCAAGCCGCTAAGCCAATGGCGGCGACCCGCCTCACCCGGCTCCGCCGCGCTCGCGATCGCCGCTAA

Upstream 100 bases:

>100_bases
GCCTGCCGAGCTGCAATGACGCCGATGTAGAAGATTCATGGCCATGGCCCAGAACACTAGTTAGCCACCGGCCGGCAGTC
TTCCGATATTCTGCCTTAAT

Downstream 100 bases:

>100_bases
GCGACCGGCTCCAGCACTTCGACACCCACGAACGGAACCAGTGCGTCCGGGACTCTAACGCTGCCGTCGGGCCGCTGGTG
GTTCTCCAGGATCGCAACCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVAL
DPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNL
TQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT
PGQAAKPMAATRLTRLRRARDRR

Sequences:

>Translated_263_residues
MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVAL
DPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNL
TQPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT
PGQAAKPMAATRLTRLRRARDRR
>Mature_262_residues
SENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIPAGCWHQHKFHGHTQFHGVALD
PQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHHRMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLT
QPLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHTP
GQAAKPMAATRLTRLRRARDRR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=30.4932735426009, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29487; Mature: 29356

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP
CCCCCCCEEEEEEEECCCCCHHHHCCCCCCEEECCCCCCEEEEECCCCEECCCCCEEEEC
AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH
CCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHH
RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHH
SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCC
PGQAAKPMAATRLTRLRRARDRR
CCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SENSHHRLATTSLTLPPGARIERHRHPSHQIVYPSAGAVSVTTHAGTWITPVNRAIWIP
CCCCCCEEEEEEEECCCCCHHHHCCCCCCEEECCCCCCEEEEECCCCEECCCCCEEEEC
AGCWHQHKFHGHTQFHGVALDPQRYRGGPATPTVLAVNPLMRELIIACSQADRTDTDEHH
CCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHH
RMLAVLQDQLPTTSIREPLWVPSPTDRRLRHACALIADNLTQPLTLQQIGGRIGVSQRTL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHH
SRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECGWATPSAFIDTYRQAFGHT
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCC
PGQAAKPMAATRLTRLRRARDRR
CCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]