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The map label for this gene is ybdB [C]

Identifier: 121637750

GI number: 121637750

Start: 2097836

End: 2098258

Strand: Direct

Name: ybdB [C]

Synonym: BCG_1883

Alternate gene names: 121637750

Gene position: 2097836-2098258 (Clockwise)

Preceding gene: 121637737

Following gene: 121637751

Centisome position: 47.96

GC content: 64.3

Gene sequence:

>423_bases
GTGCAGCCATCGCCGGACTCACCCGCTCCGCTGAATGTCACCGTGCCGTTCGACAGCGAGTTGGGTTTGCAATTCACCGA
ACTGGGTCCCGACGGGGCCCGAGCGCAGCTCGACGTCCGGCCCAAGTTGTTGCAGCTGACGGGCGTCGTGCACGGCGGTG
TCTACTGCGCGATGATCGAGAGCATCGCCAGCATGGCAGCCTTTGCCTGGCTCAATTCGCACGGCGAAGGCGGGAGTGTG
GTCGGCGTTAATAATAATACGGATTTCCTGCGCTCCATCAGCTCAGGGATGGTGTATGGCACCGCCGAACCGCTGCATCG
GGGTCGGCGGCAACAGCTGTGGCTGGTCACCATCACCGACGACACCGACCGGGTGGTCGCCCGCGGCCAAGTGCGGCTGC
AGAACCTCGAGGCGCGGCCTTAA

Upstream 100 bases:

>100_bases
GCGGCCGAGTCCTGAGGGCTGCAGTGACCCCCGGTCGACTCGATCGGCGAGCCCCGTGCCTTGGTGCACGGGGCTCGCCC
GTTGGTGTAGACACAAGGAC

Downstream 100 bases:

>100_bases
CCCGCTCGAAACCGTTGAACCTGCCGCGGCGTGGCAGGATCGCAGAGCATGCGCCTGACGCCGCACGAACAGGAGCGTTT
GCTGTTGTCCTACGCCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFLRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP

Sequences:

>Translated_140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFLRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
>Mature_140_residues
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSV
VGVNNNTDFLRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787976, Length=107, Percent_Identity=35.5140186915888, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15112; Mature: 15112

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIE
CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEECCHHEEEEHHHHHCCHHHHHHH
SIASMAAFAWLNSHGEGGSVVGVNNNTDFLRSISSGMVYGTAEPLHRGRRQQLWLVTITD
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCEEEECCHHHHCCCCCEEEEEEEEC
DTDRVVARGQVRLQNLEARP
CCCCEEECCEEEEECCCCCC
>Mature Secondary Structure
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIE
CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEECCHHEEEEHHHHHCCHHHHHHH
SIASMAAFAWLNSHGEGGSVVGVNNNTDFLRSISSGMVYGTAEPLHRGRRQQLWLVTITD
HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCEEEECCHHHHCCCCCEEEEEEEEC
DTDRVVARGQVRLQNLEARP
CCCCEEECCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]