Click here to switch to the map view.

The map label for this gene is pimF [H]

Identifier: 121637433

GI number: 121637433

Start: 1715923

End: 1716951

Strand: Direct

Name: pimF [H]

Synonym: BCG_1564

Alternate gene names: 121637433

Gene position: 1715923-1716951 (Clockwise)

Preceding gene: 121637432

Following gene: 121637434

Centisome position: 39.23

GC content: 54.91

Gene sequence:

>1029_bases
ATGCGCCTCTCGATCGTAACGACTATGTACATGTCAGAGCCTTACGTGCTGGAGTTCTACAGGAGAGCGCGCGCGGCGGC
GGACAAAATCACGCCTGACGTCGAGATCATCTTCGTGGATGACGGCTCGCCGGAGGCAGCGCTCCAGCAGGCCGTCTCGC
TGCTCGACAGCGACCCCTGTGTTCGGGTAATTCAGCTTTCGCGAAATTTCGGCCACCACAAAGCGATGATGACCGGCCTG
GCGCACGCCACGGGGGATCTCGTCTTTCTGATCGACTCAGACTTGGAAGAGGACCCGGCTCTCCTAGAGCCGTTCTATGA
AAAGCTGATCTCGACGGGCGCCGACGTAGTATTTGGTTGCCACGCGCGGCGGCCCGGCGGTTGGTTGAGGAATTTCGGAC
CGAAAATCCATTATCGGGCGTCCGCCCTGCTGTGTGACCCCCCGCTTCATGAAAATACTCTCACCGTGCGGCTGATGACA
GCCGACTATGTACGCAGCTTGGTCCAGCACCAGGAGCGTGAACTTTCGATTGCCGGTCTGTGGCAGATTACTGGTTTTTA
CCAGGTGCCCATGTCCGTAAACAAGGCATGGAAAGGAACGACCACATACACGTTTAGGCGTAAAGTAGCGACACTGGTCG
ACAATGTCACTTCATTTAGCAACAAACCTCTAGTCTTCATTTTCTATCTTGGTGCGGCCATTTTTATTATTTCAAGCTCG
GCCGCGGGCTATCTGATCATCGATCGAATTTTCTTTCGCGCTCTGCAAGCGGGGTGGGCATCCGTGATCGTATCCATCTG
GATGCTGGGGGGTGTGACGATTTTCTGCATAGGGCTGGTCGGAATTTATGTATCCAAAGTCTTCATCGAAACTAAGCAGC
GGCCATACACAATTATCCGAAGAATCTACGGTTCGGATTTAACAACCCGGGAGCCATCCTCTCTGAAGACCGCCTTCCCG
GCCGCGCACCTGTCGAACGGGAAACGCGTCACATCAGAGCCAGAGGGATTGGCAACTGGCAACAGGTGA

Upstream 100 bases:

>100_bases
CAACCTGGATCGAACGAGTCCAAAACCGCCGCGGACGCCACTCGGCCCTCGTATGATCCCGAGGAGATACCCTACGGGGT
GGATTGGGGATGGATCGGCG

Downstream 100 bases:

>100_bases
ATAAGCGTAGCATGATTCCTGTAAAGGTTGAAAACAATACTTCGCTCGATCAGGTGCAAGACGCTCTTAATTGCGTCGGG
TACGCGGTTGTAGAAGATGT

Product: putative glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRLSIVTTMYMSEPYVLEFYRRARAAADKITPDVEIIFVDDGSPEAALQQAVSLLDSDPCVRVIQLSRNFGHHKAMMTGL
AHATGDLVFLIDSDLEEDPALLEPFYEKLISTGADVVFGCHARRPGGWLRNFGPKIHYRASALLCDPPLHENTLTVRLMT
ADYVRSLVQHQERELSIAGLWQITGFYQVPMSVNKAWKGTTTYTFRRKVATLVDNVTSFSNKPLVFIFYLGAAIFIISSS
AAGYLIIDRIFFRALQAGWASVIVSIWMLGGVTIFCIGLVGIYVSKVFIETKQRPYTIIRRIYGSDLTTREPSSLKTAFP
AAHLSNGKRVTSEPEGLATGNR

Sequences:

>Translated_342_residues
MRLSIVTTMYMSEPYVLEFYRRARAAADKITPDVEIIFVDDGSPEAALQQAVSLLDSDPCVRVIQLSRNFGHHKAMMTGL
AHATGDLVFLIDSDLEEDPALLEPFYEKLISTGADVVFGCHARRPGGWLRNFGPKIHYRASALLCDPPLHENTLTVRLMT
ADYVRSLVQHQERELSIAGLWQITGFYQVPMSVNKAWKGTTTYTFRRKVATLVDNVTSFSNKPLVFIFYLGAAIFIISSS
AAGYLIIDRIFFRALQAGWASVIVSIWMLGGVTIFCIGLVGIYVSKVFIETKQRPYTIIRRIYGSDLTTREPSSLKTAFP
AAHLSNGKRVTSEPEGLATGNR
>Mature_342_residues
MRLSIVTTMYMSEPYVLEFYRRARAAADKITPDVEIIFVDDGSPEAALQQAVSLLDSDPCVRVIQLSRNFGHHKAMMTGL
AHATGDLVFLIDSDLEEDPALLEPFYEKLISTGADVVFGCHARRPGGWLRNFGPKIHYRASALLCDPPLHENTLTVRLMT
ADYVRSLVQHQERELSIAGLWQITGFYQVPMSVNKAWKGTTTYTFRRKVATLVDNVTSFSNKPLVFIFYLGAAIFIISSS
AAGYLIIDRIFFRALQAGWASVIVSIWMLGGVTIFCIGLVGIYVSKVFIETKQRPYTIIRRIYGSDLTTREPSSLKTAFP
AAHLSNGKRVTSEPEGLATGNR

Specific function: May play only a redundant role in maintaining cell wall viability and bacterial virulence [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788692, Length=305, Percent_Identity=31.4754098360656, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1788588, Length=306, Percent_Identity=25.8169934640523, Blast_Score=110, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 38110; Mature: 38110

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSIVTTMYMSEPYVLEFYRRARAAADKITPDVEIIFVDDGSPEAALQQAVSLLDSDPC
CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCH
VRVIQLSRNFGHHKAMMTGLAHATGDLVFLIDSDLEEDPALLEPFYEKLISTGADVVFGC
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE
HARRPGGWLRNFGPKIHYRASALLCDPPLHENTLTVRLMTADYVRSLVQHQERELSIAGL
CCCCCCCHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEE
WQITGFYQVPMSVNKAWKGTTTYTFRRKVATLVDNVTSFSNKPLVFIFYLGAAIFIISSS
EEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHEECC
AAGYLIIDRIFFRALQAGWASVIVSIWMLGGVTIFCIGLVGIYVSKVFIETKQRPYTIIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RIYGSDLTTREPSSLKTAFPAAHLSNGKRVTSEPEGLATGNR
HHHCCCCCCCCCCHHHHHCCHHHHCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MRLSIVTTMYMSEPYVLEFYRRARAAADKITPDVEIIFVDDGSPEAALQQAVSLLDSDPC
CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCH
VRVIQLSRNFGHHKAMMTGLAHATGDLVFLIDSDLEEDPALLEPFYEKLISTGADVVFGC
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE
HARRPGGWLRNFGPKIHYRASALLCDPPLHENTLTVRLMTADYVRSLVQHQERELSIAGL
CCCCCCCHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEE
WQITGFYQVPMSVNKAWKGTTTYTFRRKVATLVDNVTSFSNKPLVFIFYLGAAIFIISSS
EEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHEECC
AAGYLIIDRIFFRALQAGWASVIVSIWMLGGVTIFCIGLVGIYVSKVFIETKQRPYTIIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RIYGSDLTTREPSSLKTAFPAAHLSNGKRVTSEPEGLATGNR
HHHCCCCCCCCCCHHHHHCCHHHHCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]