Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
---|---|
Accession | NC_008769 |
Length | 4,374,522 |
Click here to switch to the map view.
The map label for this gene is nifU [H]
Identifier: 121637395
GI number: 121637395
Start: 1677840
End: 1678328
Strand: Direct
Name: nifU [H]
Synonym: BCG_1526
Alternate gene names: 121637395
Gene position: 1677840-1678328 (Clockwise)
Preceding gene: 121637394
Following gene: 121637396
Centisome position: 38.35
GC content: 64.01
Gene sequence:
>489_bases GTGACGTTGCGTCTGGAGCAGATCTATCAGGACGTGATCCTCGATCACTACAAGCATCCGCAGCATCGGGGGCTGCGGGA GCCGTTCGGCGCCCAGGTGTATCACGTGAACCCGATCTGCGGCGACGAGGTCACGCTGCGGGTCGCGTTGTCCGAGGACG GCACCAGGGTCACCGACGTTTCCTATGACGGACAAGGCTGTTCGATCAGCCAGGCCGCGACCTCGGTGCTCACCGAACAG GTAATCGGACAACGCGTGCCGCGGGCGCTGAACATCGTCGACGCCTTCACCGAAATGGTGTCCTCCCGCGGGACCGTGCC AGGCGACGAGGACGTCTTAGGCGATGGGGTCGCGTTCGCCGGGGTGGCCAAATACCCGGCCCGGGTGAAATGCGCGCTGC TCGGATGGATGGCGTTCAAAGATGCGCTGGCCCAAGCCAGCGAAGCCTTCGAGGAGGTTACAGATGAGCGAAACCAGCGC ACCGGCTGA
Upstream 100 bases:
>100_bases CCGCCACCGCGCGGGCGTCGTTCGCGGTGTACAACACCGCAGACGAGGTGGACCGCTTGGTGGCCGGCGTGCGGCGATCC CGGCATTTCTTTGGAAGAGC
Downstream 100 bases:
>100_bases GGAATTGCTCGCCGACGTCGAGGAGGCGATGCGCGACGTCGTCGACCCGGAGCTGGGGATCAACGTCGTTGACCTGGGCC TGGTCTACGGCTTGGACGTG
Product: putative nitrogen fixation related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MTLRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDVSYDGQGCSISQAATSVLTEQ VIGQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFAGVAKYPARVKCALLGWMAFKDALAQASEAFEEVTDERNQR TG
Sequences:
>Translated_162_residues MTLRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDVSYDGQGCSISQAATSVLTEQ VIGQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFAGVAKYPARVKCALLGWMAFKDALAQASEAFEEVTDERNQR TG >Mature_161_residues TLRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDVSYDGQGCSISQAATSVLTEQV IGQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFAGVAKYPARVKCALLGWMAFKDALAQASEAFEEVTDERNQRT G
Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]
COG id: COG0822
COG function: function code C; NifU homolog involved in Fe-S cluster formation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nifU family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002871 - InterPro: IPR011341 [H]
Pfam domain/function: PF01592 NifU_N [H]
EC number: NA
Molecular weight: Translated: 17711; Mature: 17580
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDV CCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE SYDGQGCSISQAATSVLTEQVIGQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFA EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH GVAKYPARVKCALLGWMAFKDALAQASEAFEEVTDERNQRTG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TLRLEQIYQDVILDHYKHPQHRGLREPFGAQVYHVNPICGDEVTLRVALSEDGTRVTDV CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE SYDGQGCSISQAATSVLTEQVIGQRVPRALNIVDAFTEMVSSRGTVPGDEDVLGDGVAFA EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH GVAKYPARVKCALLGWMAFKDALAQASEAFEEVTDERNQRTG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]