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The map label for this gene is tnpR [H]

Identifier: 121583562

GI number: 121583562

Start: 19167

End: 19736

Strand: Reverse

Name: tnpR [H]

Synonym: Pnap_4991

Alternate gene names: 121583562

Gene position: 19736-19167 (Counterclockwise)

Preceding gene: 121583563

Following gene: 121583561

Centisome position: 91.32

GC content: 59.65

Gene sequence:

>570_bases
ATGAGTCAACGAATCGGTTATGCCCGTGTCTCCACCGATGATCAGAATCTGGACTTGCAACGTGATGCCCTGACCCGTTC
AGGCTGCATCACGATTTACGAAGAGACGGCTTCGGGCAAGTCGGCCACGCGCATCGAGCTGGCGCATTGCCTCAAGTCGC
TGCGTTCGGGCGACACCCTGGTGGTGTGGCGACTGGACCGGTTGGGGCGTTCCCTGTCTGACCTGGTGAAGATCATTGGA
GACCTGGAGCGTGAAGGCATCCCCTTTGAAAGCCTGAGCGAGAAAATCGACACGGGCAGTGCTTCCGGTAAGTTGCAGTT
CCATGTTTTCGCGGCCCTGGCCGAGTTCGAGCGCAATCTGATACGGGAGCGCACCCTGGCGGGCCTCACTGCTGCGCGCG
CCCGTGGCAGGGTGGGTGGTCGCAAGCCCAAGCTCAACGAAAAGCAGATACGGGAGATCAAGACACTGCTGACTGATCCA
GCGGCGCAGGTGAAGGACATTGCCGAGCGTTATGGCGTGTCGCGGACGACCCTGTACAAACGTGTGGGGGTGGTTCAGCC
TTTGAAGTAG

Upstream 100 bases:

>100_bases
ACGGTCGTTTAGTTGACACTTGCAAAATGGGCTTTAAAAGCCCATTTTTTGGCTCAAATGTGTAAACTAACTCATATTTA
AATCAAAGTTCACTAAACGT

Downstream 100 bases:

>100_bases
AGCCACCAGGCACACTGAAAACAGGCGTTATGTTGAGTAGAGAAGAAATATTAACGAATGTCGGTTACCAAATTACCGTT
ACTTGGTTATAATTGTAGTT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTLVVWRLDRLGRSLSDLVKIIG
DLEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNLIRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDP
AAQVKDIAERYGVSRTTLYKRVGVVQPLK

Sequences:

>Translated_189_residues
MSQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTLVVWRLDRLGRSLSDLVKIIG
DLEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNLIRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDP
AAQVKDIAERYGVSRTTLYKRVGVVQPLK
>Mature_188_residues
SQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTLVVWRLDRLGRSLSDLVKIIGD
LEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNLIRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDPA
AQVKDIAERYGVSRTTLYKRVGVVQPLK

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=177, Percent_Identity=51.4124293785311, Blast_Score=170, Evalue=6e-44,
Organism=Escherichia coli, GI1787827, Length=187, Percent_Identity=36.8983957219251, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787638, Length=187, Percent_Identity=36.3636363636364, Blast_Score=97, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21025; Mature: 20894

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTL
CCCCCCCEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
VVWRLDRLGRSLSDLVKIIGDLEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNL
EEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
IRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDPAAQVKDIAERYGVSRTTLYK
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
RVGVVQPLK
HHCCCCCCC
>Mature Secondary Structure 
SQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTL
CCCCCCEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
VVWRLDRLGRSLSDLVKIIGDLEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNL
EEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
IRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDPAAQVKDIAERYGVSRTTLYK
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
RVGVVQPLK
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]