Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612944
Identifier: 120612944
GI number: 120612944
Start: 4784210
End: 4785241
Strand: Reverse
Name: 120612944
Synonym: Aave_4308
Alternate gene names: NA
Gene position: 4785241-4784210 (Counterclockwise)
Preceding gene: 120612945
Following gene: 120612943
Centisome position: 89.4
GC content: 72.48
Gene sequence:
>1032_bases ATGCCTTTGTTCCCCACCGCCCCCCTGGCCCGCGCCAACCGCCGCACGCTGCTGGGCCTCGCCGCCGCCGGGCCGCTCGC GCTGCTGTCGGCCGGCACGGCCGGGGCGCAGCCGTCCGCGCCGGCCGCTGCCTGGCCCGGCAAGATGATCCGGCTGGTGG TGCCTTTCCCCGCGGGCGGACCCACCGACACGGCCTCGCGCATCGTGGGGCAGAAGCTGGCCGGGCGGCTCGGGCAGGCC GTGGTGGCGGACAACCGGCCGGGCGCGTCGGGCTCGATCGCCGCGCTGCAGGTGGCCAGGTCCGACCCGGATGGCTACAC GCTGATGATGCTGGCCACGCCCACGCTGCTGGCGCCGCACCTCTACAGGAAGACCGGCTACGACACGCTCCAGGATTTCA CGCCGGTGGCCACGGTGTACGACCTGCCGATCGTGGTGGTCGTCAATCCCGCGCAGCTGCCCGACGTGAAGACCCTGCCC CAGCTCATCGCCCACGCCAAGGCGCAGAAGACGCCGATGAACTACACCAGCTCGGGCACCGGCAGCTTCGGCCACCTGAG CATGGAACTGCTCAAGCAGATGGGCGGGTTCGACATGCAGCACGTGCCCTACAAGGGCGGCGTGCCCGCGATCACCGACA CCATCGGCGGCCAGGTGCCGGTGATGTATGCCGACCTGGTGGCGGCGCTGCCGCACGTGCAGGCCGGCAAGCTGCGCGCC ATCGCCGTGGGGTCGCCGCGGCGCGTGGGCGTGCTGCCCGATGTGCCTACGATCGCCGAGCAGGGTTTCCAGGGCTACGA CGCGGTGTCGTGGGGCGGCCTGATGGCGCCGCGCGGCACGCCGAAGGCGGTGGTGGACCGCGTGGCCGGCGAGGTGCGGC AGATCCTGGCCGAGAAGGACACGCAGGAGCGGCTGCTGGGCGCGGGCGCCATCGCGCACTTCCAGGACCCGGCGCAGATG GCCGAGCGCGTGCGGCAGGATTACGCCAAGTGGGGCGGGATCATCCGCGACAAGGGCATCGCATCCGAGTGA
Upstream 100 bases:
>100_bases GGGCAGGGGCGCTCCCTGCCATGGCGGCGCTGGAAAGGCGCCGCGACCCCCTGCCCCTTTTTTTCCATTGAACCCAGAAC CGCAACCGGAGACACGACGA
Downstream 100 bases:
>100_bases CCGGGCGTCCCGGCCCCATCCATTTCTTCTTTTTCCATCCTTTATCCAACGAGGTCATCCCATGAAAATCCTGGTCCCCG TCAAGCGCGTGGTGGACTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MPLFPTAPLARANRRTLLGLAAAGPLALLSAGTAGAQPSAPAAAWPGKMIRLVVPFPAGGPTDTASRIVGQKLAGRLGQA VVADNRPGASGSIAALQVARSDPDGYTLMMLATPTLLAPHLYRKTGYDTLQDFTPVATVYDLPIVVVVNPAQLPDVKTLP QLIAHAKAQKTPMNYTSSGTGSFGHLSMELLKQMGGFDMQHVPYKGGVPAITDTIGGQVPVMYADLVAALPHVQAGKLRA IAVGSPRRVGVLPDVPTIAEQGFQGYDAVSWGGLMAPRGTPKAVVDRVAGEVRQILAEKDTQERLLGAGAIAHFQDPAQM AERVRQDYAKWGGIIRDKGIASE
Sequences:
>Translated_343_residues MPLFPTAPLARANRRTLLGLAAAGPLALLSAGTAGAQPSAPAAAWPGKMIRLVVPFPAGGPTDTASRIVGQKLAGRLGQA VVADNRPGASGSIAALQVARSDPDGYTLMMLATPTLLAPHLYRKTGYDTLQDFTPVATVYDLPIVVVVNPAQLPDVKTLP QLIAHAKAQKTPMNYTSSGTGSFGHLSMELLKQMGGFDMQHVPYKGGVPAITDTIGGQVPVMYADLVAALPHVQAGKLRA IAVGSPRRVGVLPDVPTIAEQGFQGYDAVSWGGLMAPRGTPKAVVDRVAGEVRQILAEKDTQERLLGAGAIAHFQDPAQM AERVRQDYAKWGGIIRDKGIASE >Mature_342_residues PLFPTAPLARANRRTLLGLAAAGPLALLSAGTAGAQPSAPAAAWPGKMIRLVVPFPAGGPTDTASRIVGQKLAGRLGQAV VADNRPGASGSIAALQVARSDPDGYTLMMLATPTLLAPHLYRKTGYDTLQDFTPVATVYDLPIVVVVNPAQLPDVKTLPQ LIAHAKAQKTPMNYTSSGTGSFGHLSMELLKQMGGFDMQHVPYKGGVPAITDTIGGQVPVMYADLVAALPHVQAGKLRAI AVGSPRRVGVLPDVPTIAEQGFQGYDAVSWGGLMAPRGTPKAVVDRVAGEVRQILAEKDTQERLLGAGAIAHFQDPAQMA ERVRQDYAKWGGIIRDKGIASE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35869; Mature: 35738
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFPTAPLARANRRTLLGLAAAGPLALLSAGTAGAQPSAPAAAWPGKMIRLVVPFPAGG CCCCCCCCHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC PTDTASRIVGQKLAGRLGQAVVADNRPGASGSIAALQVARSDPDGYTLMMLATPTLLAPH CCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHH LYRKTGYDTLQDFTPVATVYDLPIVVVVNPAQLPDVKTLPQLIAHAKAQKTPMNYTSSGT HHHHCCCHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GSFGHLSMELLKQMGGFDMQHVPYKGGVPAITDTIGGQVPVMYADLVAALPHVQAGKLRA CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEE IAVGSPRRVGVLPDVPTIAEQGFQGYDAVSWGGLMAPRGTPKAVVDRVAGEVRQILAEKD EEECCCCEECCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC TQERLLGAGAIAHFQDPAQMAERVRQDYAKWGGIIRDKGIASE HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCC >Mature Secondary Structure PLFPTAPLARANRRTLLGLAAAGPLALLSAGTAGAQPSAPAAAWPGKMIRLVVPFPAGG CCCCCCCHHHCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC PTDTASRIVGQKLAGRLGQAVVADNRPGASGSIAALQVARSDPDGYTLMMLATPTLLAPH CCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHH LYRKTGYDTLQDFTPVATVYDLPIVVVVNPAQLPDVKTLPQLIAHAKAQKTPMNYTSSGT HHHHCCCHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC GSFGHLSMELLKQMGGFDMQHVPYKGGVPAITDTIGGQVPVMYADLVAALPHVQAGKLRA CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEE IAVGSPRRVGVLPDVPTIAEQGFQGYDAVSWGGLMAPRGTPKAVVDRVAGEVRQILAEKD EEECCCCEECCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC TQERLLGAGAIAHFQDPAQMAERVRQDYAKWGGIIRDKGIASE HHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]