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The map label for this gene is yagI [H]

Identifier: 120612898

GI number: 120612898

Start: 4725489

End: 4726298

Strand: Reverse

Name: yagI [H]

Synonym: Aave_4262

Alternate gene names: 120612898

Gene position: 4726298-4725489 (Counterclockwise)

Preceding gene: 120612899

Following gene: 120612894

Centisome position: 88.3

GC content: 75.8

Gene sequence:

>810_bases
ATGTCCCGCTCTCCTCCCGACACTGACGTCCCGCGCGACGGCGCGCAGAGCGTGCGCCGCGCCATCGCGGTGCTGCGCAT
CGTCGCGGGGGGGCAGGAAAGCGGCGTGCGGCTGATCGACGTCTCGCTGGCCACGGGGCTCAACCGCCCCACGGCGCACC
GCCTGCTGCGCGCGCTGGTGCAGGAGGGCGCGGTGGAGCAGGACGCGGCCACGCGCCGCTACCGCATCGGCCGGGAGGTC
TCGCTCATGGGGCTGGCGCGGCCCGCGGGCTTTCCGCTGCGCGCGATCGCCGCGCCGCACCTGCGGCACCTGGGAGAAAC
GCTGGGAGAAACCGCCTTCCTCACCATCCGCCAGGGCGATGATTCGGTGTGCCTGGATCGGGCCATCGGCAGCTACCCCG
TCAAGGTGCTGTCCATCGACGTGGGCGCGCGCCGGCTGCTGGGAGTGGGCGTGAGCGGCGTGGTGCTGCTCGCCGCGCTG
GATGCCGCGGAGGCCGCGGAGATCCTCGGGCGCAACGCCGCCCGCCTGCGGGCCCTGCGGCTCGATGCCGCGGACGTGCT
GGAGCGCTGCGCGCAGGCGCGCGCACTGGGCCATGCCTATGCGCCCGTGGGCGTGGTGCGCGGCACGCGCGCGGTGGCCG
TACCGGTGCGCACGCCCGCCGGCCGCACGGTGGCGGCGATCGCCGTCACGGCGATCACCTCGCGCCTGACCGAGGCGCGC
CTGCCGCAGGTGGTGCAGGCCATGCAGGCGCAGGCCGGAGACATCGGCCGCGAGGCACAGGCGCGCGGCCTCGGCGGCAC
CCCTCAATAG

Upstream 100 bases:

>100_bases
GGGCCGAACTACGCCACGCTCGGGCGCGTGGTGACGCTGCGCACCATGCCGCAGACCGCCAAGACCGTGACCACGGCGCA
GTGAGCGCGGGGCAGCGCGC

Downstream 100 bases:

>100_bases
CTGTACACCCCCTGGCCCGTCTTGCGGCCCAGGCGCCCCGCGGCCACCATTTCCTTGAGCAGCGGGCAGGGCCGGTACTT
GCTGTCGCCGAACTCTTCCA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSRSPPDTDVPRDGAQSVRRAIAVLRIVAGGQESGVRLIDVSLATGLNRPTAHRLLRALVQEGAVEQDAATRRYRIGREV
SLMGLARPAGFPLRAIAAPHLRHLGETLGETAFLTIRQGDDSVCLDRAIGSYPVKVLSIDVGARRLLGVGVSGVVLLAAL
DAAEAAEILGRNAARLRALRLDAADVLERCAQARALGHAYAPVGVVRGTRAVAVPVRTPAGRTVAAIAVTAITSRLTEAR
LPQVVQAMQAQAGDIGREAQARGLGGTPQ

Sequences:

>Translated_269_residues
MSRSPPDTDVPRDGAQSVRRAIAVLRIVAGGQESGVRLIDVSLATGLNRPTAHRLLRALVQEGAVEQDAATRRYRIGREV
SLMGLARPAGFPLRAIAAPHLRHLGETLGETAFLTIRQGDDSVCLDRAIGSYPVKVLSIDVGARRLLGVGVSGVVLLAAL
DAAEAAEILGRNAARLRALRLDAADVLERCAQARALGHAYAPVGVVRGTRAVAVPVRTPAGRTVAAIAVTAITSRLTEAR
LPQVVQAMQAQAGDIGREAQARGLGGTPQ
>Mature_268_residues
SRSPPDTDVPRDGAQSVRRAIAVLRIVAGGQESGVRLIDVSLATGLNRPTAHRLLRALVQEGAVEQDAATRRYRIGREVS
LMGLARPAGFPLRAIAAPHLRHLGETLGETAFLTIRQGDDSVCLDRAIGSYPVKVLSIDVGARRLLGVGVSGVVLLAALD
AAEAAEILGRNAARLRALRLDAADVLERCAQARALGHAYAPVGVVRGTRAVAVPVRTPAGRTVAAIAVTAITSRLTEARL
PQVVQAMQAQAGDIGREAQARGLGGTPQ

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=240, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786715, Length=263, Percent_Identity=29.277566539924, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082359, Length=247, Percent_Identity=25.9109311740891, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28117; Mature: 27986

Theoretical pI: Translated: 11.65; Mature: 11.65

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSPPDTDVPRDGAQSVRRAIAVLRIVAGGQESGVRLIDVSLATGLNRPTAHRLLRALV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHH
QEGAVEQDAATRRYRIGREVSLMGLARPAGFPLRAIAAPHLRHLGETLGETAFLTIRQGD
HCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCC
DSVCLDRAIGSYPVKVLSIDVGARRLLGVGVSGVVLLAALDAAEAAEILGRNAARLRALR
CCHHHHHHCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LDAADVLERCAQARALGHAYAPVGVVRGTRAVAVPVRTPAGRTVAAIAVTAITSRLTEAR
CCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LPQVVQAMQAQAGDIGREAQARGLGGTPQ
HHHHHHHHHHHHCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SRSPPDTDVPRDGAQSVRRAIAVLRIVAGGQESGVRLIDVSLATGLNRPTAHRLLRALV
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHH
QEGAVEQDAATRRYRIGREVSLMGLARPAGFPLRAIAAPHLRHLGETLGETAFLTIRQGD
HCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCC
DSVCLDRAIGSYPVKVLSIDVGARRLLGVGVSGVVLLAALDAAEAAEILGRNAARLRALR
CCHHHHHHCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LDAADVLERCAQARALGHAYAPVGVVRGTRAVAVPVRTPAGRTVAAIAVTAITSRLTEAR
CCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LPQVVQAMQAQAGDIGREAQARGLGGTPQ
HHHHHHHHHHHHCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]