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The map label for this gene is nodJ [H]

Identifier: 120612896

GI number: 120612896

Start: 4723775

End: 4724590

Strand: Direct

Name: nodJ [H]

Synonym: Aave_4260

Alternate gene names: 120612896

Gene position: 4723775-4724590 (Clockwise)

Preceding gene: 120612895

Following gene: 120612897

Centisome position: 88.25

GC content: 67.28

Gene sequence:

>816_bases
ATGGACTCTCCCACGCCTTCCACGCCCAGCCACTGGCGCCCGCCCGCGCCCACCGCGCGCTGGTGGCCCGTGTTCCTGCG
CAACCTGCTCGTGTGGCGCAAGCTCGCGGTGCCGAGCCTGCTGGGCAACATCGCCGAGCCGCTGATGTGGCTGGTGGCCT
TCGGTTACGGCATGGGGGCGCTGGTGGGCCAGGTGAACGTGGGCGGGCATGCGGTGCCCTACATCCTGTTCCTGGCCAGC
GGCTCGATCTGCATGAGCGCGATGAACGCGGCGAGCTTCGAGGCGCTCTACTCCGCGTTCTCCCGCATGCACGTGCAGAA
GACCTGGGACGGCATCATGAACGCCCCCGTGGGCCTGGACGACGTGGTGCTGGCCGAGATGCTCTGGGCCGCGTTCAAGG
CGTTCTTCACCGTGACGGCGATCATGGGGGTGATGCTGGCGCTCGGCATCAGCCACAGCCCGAAGCTGCTGATCGCGTGG
CCCGTATTGCTGCTGGCGGGCGTGATGTTCTCCAGCATCGCGCTCATCTTCAACGCCCTGGCCAAGGGCTACGACTTCTT
CACCTACTACTTCACCCTGGTGCTCACGCCGATGATGTTCCTGTCGGGCGTGTTCTTCCCGCGCGAACAGTTGCCGGACC
TGGTGCGCCGCGTGTCGGACTGGCTGCCGCTCACCAACGTGGTCGAATTGGTGCGGCCGCTCTTCATGGACCAGTGGCCC
GCCCATCCGCTGCGCCACGGGCTGGTGGTGGGCCTCACCGCGCTGGTCTCGTTCTGGATCGCGCTCGCGCTCACGCGGCG
GCGCTTCGCGAAATAG

Upstream 100 bases:

>100_bases
TCAAGCTCACCGGCCGCCAGATCCGCGAGTGAGGGGCTGCCGCCCTCGTGCCCGAGCCTGCTCCCCTTTCCTTTTTCCGC
CGCCTCCAGGACCGAACCCC

Downstream 100 bases:

>100_bases
GTTTTTCCGCTGTCCTTTCTTTTGTCTTTTCCACTCGTTCTTCAGGAGGATTCCCAATGACGATCAACACCGTCGGCATC
ATCGGCGCGGGCACCATGGG

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MDSPTPSTPSHWRPPAPTARWWPVFLRNLLVWRKLAVPSLLGNIAEPLMWLVAFGYGMGALVGQVNVGGHAVPYILFLAS
GSICMSAMNAASFEALYSAFSRMHVQKTWDGIMNAPVGLDDVVLAEMLWAAFKAFFTVTAIMGVMLALGISHSPKLLIAW
PVLLLAGVMFSSIALIFNALAKGYDFFTYYFTLVLTPMMFLSGVFFPREQLPDLVRRVSDWLPLTNVVELVRPLFMDQWP
AHPLRHGLVVGLTALVSFWIALALTRRRFAK

Sequences:

>Translated_271_residues
MDSPTPSTPSHWRPPAPTARWWPVFLRNLLVWRKLAVPSLLGNIAEPLMWLVAFGYGMGALVGQVNVGGHAVPYILFLAS
GSICMSAMNAASFEALYSAFSRMHVQKTWDGIMNAPVGLDDVVLAEMLWAAFKAFFTVTAIMGVMLALGISHSPKLLIAW
PVLLLAGVMFSSIALIFNALAKGYDFFTYYFTLVLTPMMFLSGVFFPREQLPDLVRRVSDWLPLTNVVELVRPLFMDQWP
AHPLRHGLVVGLTALVSFWIALALTRRRFAK
>Mature_271_residues
MDSPTPSTPSHWRPPAPTARWWPVFLRNLLVWRKLAVPSLLGNIAEPLMWLVAFGYGMGALVGQVNVGGHAVPYILFLAS
GSICMSAMNAASFEALYSAFSRMHVQKTWDGIMNAPVGLDDVVLAEMLWAAFKAFFTVTAIMGVMLALGISHSPKLLIAW
PVLLLAGVMFSSIALIFNALAKGYDFFTYYFTLVLTPMMFLSGVFFPREQLPDLVRRVSDWLPLTNVVELVRPLFMDQWP
AHPLRHGLVVGLTALVSFWIALALTRRRFAK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30142; Mature: 30142

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]