Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ycbL [C]
Identifier: 120612838
GI number: 120612838
Start: 4656119
End: 4657072
Strand: Direct
Name: ycbL [C]
Synonym: Aave_4202
Alternate gene names: 120612838
Gene position: 4656119-4657072 (Clockwise)
Preceding gene: 120612837
Following gene: 120612840
Centisome position: 86.99
GC content: 73.58
Gene sequence:
>954_bases ATGCACATCCCCACGCCCCAGGCCCCCGTCGGCGGCACCGCGCCGCTCCTGCCGCCCGGCACCACGGTGCTCGAACGCGG CTGGCTTTCGGCCAACAACATCGTCTGCGTGGGAGAAGACGCGGCGGCCGTGGTGGACACGGGCTACTGCGCGCATGCGG CCCAGACGGTGGCGCTGGTGGCGGCCGCCCTGGGGGGCCGGCCCCTGGCGCTCATCGCCAACACCCACCTGCACAGCGAC CACTGCGGCGGGAACGCGGCGCTGCAGCAGGCCTGGCCGGCGGCGCGCACCCTGGTGCCGCCCGGGCAGGCCGAACACGT GCGCGACTGGGATCCGCAGGCCCTGAGCTATACGCCCACGGGGCAGGACTGCCCGCGCTTTCGCATGGACGGCCTGCTGC AGCCCGGAGGCACGGCGCGCCTGGGCGCGCACGACTGGCAGATCCATGCCGCGCCCGGGCACGACACGCATTCCGTGGTG CTGTTCGAGCCCCGGCACCGGGTGCTGCTGTCGGCCGACGCGCTCTGGGAGAACGGCTTCGGCGTGGTGTTTCCTGAACT GGAAGGCGAGCACGCGTTCGAGGATGTCGCAGCCACCCTGGACCTGATCGCCGGGCTGGCGCCGCGCACCGTCGTGCCCG GGCACGGTTCCGTGTTCACCGACGTGGAGCGCGCGCTCGGCGCCGCGCGGCGCCGGCTCGACGGGTTCGTGCGCGCGCCG GAGCGGCACGCGCTCTATGCCGCCAAGGTGCTGATCAAGTACAAGCTGCTCGAATGGCAGAGCGTGCCGCTCGCCCGGCT GCACGCCTGGGCCGAGGCCACGCCGTATTTCGGCCTGCTCCATGCCGGCCATTTCGCGGACCGGCCCCGCCCCGCATGGC AGGAGGCGCTGGTGCACGACCTCGTGCGCAGCGGAGCCGCCCGGCTGGAAGGGGAGACGCTGCACAACGCCTGA
Upstream 100 bases:
>100_bases GATCGCCCGACATCGCCGGATGCGGGGCGGGCGCGAAGGGTTGCGCCGGATGGATGAACGGCGGGGGCCGGTGCCATACT TTCCCGCAGAGGCTCTTCCC
Downstream 100 bases:
>100_bases AGGGAGCGGGCCAGGGCCAGGCCGGCGTTGCCGCTGGACGGAGCGCGCGTGGCGCTCCCGTCCGTTCTCAGGGCAGTTCG CGGCTCGGGTCCGGCGTGGC
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Hydroxyacylglutathione Hydrolase; Beta Lactamase; Beta Lactamase Protein; Beta-Lactamase
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MHIPTPQAPVGGTAPLLPPGTTVLERGWLSANNIVCVGEDAAAVVDTGYCAHAAQTVALVAAALGGRPLALIANTHLHSD HCGGNAALQQAWPAARTLVPPGQAEHVRDWDPQALSYTPTGQDCPRFRMDGLLQPGGTARLGAHDWQIHAAPGHDTHSVV LFEPRHRVLLSADALWENGFGVVFPELEGEHAFEDVAATLDLIAGLAPRTVVPGHGSVFTDVERALGAARRRLDGFVRAP ERHALYAAKVLIKYKLLEWQSVPLARLHAWAEATPYFGLLHAGHFADRPRPAWQEALVHDLVRSGAARLEGETLHNA
Sequences:
>Translated_317_residues MHIPTPQAPVGGTAPLLPPGTTVLERGWLSANNIVCVGEDAAAVVDTGYCAHAAQTVALVAAALGGRPLALIANTHLHSD HCGGNAALQQAWPAARTLVPPGQAEHVRDWDPQALSYTPTGQDCPRFRMDGLLQPGGTARLGAHDWQIHAAPGHDTHSVV LFEPRHRVLLSADALWENGFGVVFPELEGEHAFEDVAATLDLIAGLAPRTVVPGHGSVFTDVERALGAARRRLDGFVRAP ERHALYAAKVLIKYKLLEWQSVPLARLHAWAEATPYFGLLHAGHFADRPRPAWQEALVHDLVRSGAARLEGETLHNA >Mature_317_residues MHIPTPQAPVGGTAPLLPPGTTVLERGWLSANNIVCVGEDAAAVVDTGYCAHAAQTVALVAAALGGRPLALIANTHLHSD HCGGNAALQQAWPAARTLVPPGQAEHVRDWDPQALSYTPTGQDCPRFRMDGLLQPGGTARLGAHDWQIHAAPGHDTHSVV LFEPRHRVLLSADALWENGFGVVFPELEGEHAFEDVAATLDLIAGLAPRTVVPGHGSVFTDVERALGAARRRLDGFVRAP ERHALYAAKVLIKYKLLEWQSVPLARLHAWAEATPYFGLLHAGHFADRPRPAWQEALVHDLVRSGAARLEGETLHNA
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33965; Mature: 33965
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIPTPQAPVGGTAPLLPPGTTVLERGWLSANNIVCVGEDAAAVVDTGYCAHAAQTVALV CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHH AAALGGRPLALIANTHLHSDHCGGNAALQQAWPAARTLVPPGQAEHVRDWDPQALSYTPT HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCEEECCC GQDCPRFRMDGLLQPGGTARLGAHDWQIHAAPGHDTHSVVLFEPRHRVLLSADALWENGF CCCCCCHHHCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEECCCCEEEEEEHHHHCCCC GVVFPELEGEHAFEDVAATLDLIAGLAPRTVVPGHGSVFTDVERALGAARRRLDGFVRAP EEEECCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC ERHALYAAKVLIKYKLLEWQSVPLARLHAWAEATPYFGLLHAGHFADRPRPAWQEALVHD HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHH LVRSGAARLEGETLHNA HHHCCHHHCCCCCCCCC >Mature Secondary Structure MHIPTPQAPVGGTAPLLPPGTTVLERGWLSANNIVCVGEDAAAVVDTGYCAHAAQTVALV CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHHH AAALGGRPLALIANTHLHSDHCGGNAALQQAWPAARTLVPPGQAEHVRDWDPQALSYTPT HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCEEECCC GQDCPRFRMDGLLQPGGTARLGAHDWQIHAAPGHDTHSVVLFEPRHRVLLSADALWENGF CCCCCCHHHCCCCCCCCCEEECCCCEEEEECCCCCCCEEEEECCCCEEEEEEHHHHCCCC GVVFPELEGEHAFEDVAATLDLIAGLAPRTVVPGHGSVFTDVERALGAARRRLDGFVRAP EEEECCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCC ERHALYAAKVLIKYKLLEWQSVPLARLHAWAEATPYFGLLHAGHFADRPRPAWQEALVHD HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHH LVRSGAARLEGETLHNA HHHCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA