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The map label for this gene is rbsD

Identifier: 120612837

GI number: 120612837

Start: 4655494

End: 4655886

Strand: Direct

Name: rbsD

Synonym: Aave_4201

Alternate gene names: 120612837

Gene position: 4655494-4655886 (Clockwise)

Preceding gene: 120612836

Following gene: 120612838

Centisome position: 86.97

GC content: 74.05

Gene sequence:

>393_bases
ATGAAACGCACCGCACTGCTGCACGCCGACCTGTCCCGCGCCATCGCCGCCCTGGGCCATGGCGACATGATCGTCATCGG
CGATGCCGGCCTGCCGATTCCGCCCGGCCCCCTGCGCATCGACCTGGCCGTGACCCCGGGGCTGCCCGCGGTGGCCGACG
TGCTGGCCGCCGTGCTCTCCGAAATGCAGGTGGAGCGCGCCCTGGTCGCCACCGAGGCGGTGGAGCGCGCTGGCGGGGCC
CTGCCCGGCTGGGCCGGCGCGCTGCCCGTGGCCCCGCAGACCCTGTCGCACGAGGAATTCAAGCGCCTCACGCGCGATGC
GCGCGCCGTGGTGCGGACGGGCGAGTGCACGCCCTACGCCAACGTGATCCTCTGCGCGGGCGTGACGTTCTGA

Upstream 100 bases:

>100_bases
CCGCGGCGCTGTGCGTGACCCGTCCGGGCGCGCAGCCATCGATCCCCACGCGCGCCGAAGTGGCCGCATCCCCCATGCCC
CCTGAATGGAGCCGCATCGC

Downstream 100 bases:

>100_bases
CCGGACTTCAGGTGCGTCCCAGGGGCATGGCACCGCGCGCGGACCACCACAAGCCCCGCAGGCGCAGTGCCCGCCCCGCG
CCGGCTCCCGCGAACACGCC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRTALLHADLSRAIAALGHGDMIVIGDAGLPIPPGPLRIDLAVTPGLPAVADVLAAVLSEMQVERALVATEAVERAGGA
LPGWAGALPVAPQTLSHEEFKRLTRDARAVVRTGECTPYANVILCAGVTF

Sequences:

>Translated_130_residues
MKRTALLHADLSRAIAALGHGDMIVIGDAGLPIPPGPLRIDLAVTPGLPAVADVLAAVLSEMQVERALVATEAVERAGGA
LPGWAGALPVAPQTLSHEEFKRLTRDARAVVRTGECTPYANVILCAGVTF
>Mature_130_residues
MKRTALLHADLSRAIAALGHGDMIVIGDAGLPIPPGPLRIDLAVTPGLPAVADVLAAVLSEMQVERALVATEAVERAGGA
LPGWAGALPVAPQTLSHEEFKRLTRDARAVVRTGECTPYANVILCAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=140, Percent_Identity=43.5714285714286, Blast_Score=123, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_ACIAC (A1TUV3)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_972515.1
- ProteinModelPortal:   A1TUV3
- SMR:   A1TUV3
- STRING:   A1TUV3
- GeneID:   4666923
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_4201
- NMPDR:   fig|397945.5.peg.3600
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   A1TUV3
- ProtClustDB:   PRK11797
- BioCyc:   AAVE397945:AAVE_4201-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 13439; Mature: 13439

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 97-97

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTALLHADLSRAIAALGHGDMIVIGDAGLPIPPGPLRIDLAVTPGLPAVADVLAAVLS
CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
EMQVERALVATEAVERAGGALPGWAGALPVAPQTLSHEEFKRLTRDARAVVRTGECTPYA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
NVILCAGVTF
CEEEECCCCC
>Mature Secondary Structure
MKRTALLHADLSRAIAALGHGDMIVIGDAGLPIPPGPLRIDLAVTPGLPAVADVLAAVLS
CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
EMQVERALVATEAVERAGGALPGWAGALPVAPQTLSHEEFKRLTRDARAVVRTGECTPYA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
NVILCAGVTF
CEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA