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The map label for this gene is rbsC [H]

Identifier: 120612834

GI number: 120612834

Start: 4652452

End: 4653441

Strand: Direct

Name: rbsC [H]

Synonym: Aave_4198

Alternate gene names: 120612834

Gene position: 4652452-4653441 (Clockwise)

Preceding gene: 120612833

Following gene: 120612835

Centisome position: 86.92

GC content: 72.22

Gene sequence:

>990_bases
ATGACCGCCACCACGCACCCCTCTTCCGCTTCCGCCGCGCCGTCGGTGCCGCTCTGGCGCACGCAACTGGGTACCTACCT
GGGCCTGGCCGCCGTGCTGGTGGGCATGGTGGCGCTGTTTTCCTGGCTGTCCGATTTCTTCTGGAGCGCCGAGACCTTCG
TCACCATCGCCAACGAGATTCCCGCGCTGGCCGTGATGGCGGTGGGCATGACCTTCGTGCTGATCATCGCGGGCATCGAC
CTGTCGGTCGGCTCGGTGATGGCGCTGGCCGCGGCGACGTCGGCCGCGGCCATCCTGCAATGGGGCTGGAGCGTGCCGGC
GGCCGCGGCCCTGGCGCTGGCCACGGGCCTGGTGTGCGGCACCATCACGGGCGCCGTGTCGGTGGCTTGGCGGCTGCCGT
CGTTCATCGTGTCGCTCGGCATGCTGGAGGCGGTGCGCGGCAGCGCCTACCTCGTGACGGACTCGCGCACGCAGTACGTG
GGCGACGCGATTTCCTGGCTCGCCGCGCCGGTGGCGGCCGGCGTCTCGGTGGCCTTCGGCATCGCGCTGCTCATCGTGGT
GCTGGCCCAGCTCGTGCTGTCGCGCACGGTGTTCGGCCGCTGCATGGTGGGCATCGGCACCAACGAGGAGGCCATGCGGC
TGGCCGGCGTCGATCCGCGCCCCATCCGCATCGCCGTGTTCGCGCTCACCGGCCTGCTGGCCGGGCTGGGGGGCCTGATG
CAGTCGGCCCGCCTGGAGGCGGCCGACCCCAACGCCGGCGCCGGCATGGAGCTGCAGGTGATCGCGGCCGTGGTGATCGG
CGGCACCAGCCTGATGGGCGGGCGCGGATCGGTGGTGACCACGGCCTTCGGCGTGCTCATCATCGCGGTGCTGGAGGCCG
GCCTCGCGCAGATCGGCGCGAGCGAGCCGAGCAAGCGCATCATCACCGGCTGCGTGATCGTGGCGGCCGTCATCGTCGAC
ACGCTGCGGCAGCGCCGCGCCGCGGTCTGA

Upstream 100 bases:

>100_bases
GGACCGAGCAGTCGCTGCTGGCCGCCGCTTTCTCCGAAGCCGAAGACCGCCCGCGCGCCGAAGGCGCCGGTTCCGCATCC
CCCCTTTCCCCCGCTTCCGC

Downstream 100 bases:

>100_bases
CGCCGGCACGCGAAGACATGGCGACCATCAAGGACGTCGCGCGCGAGGCCGGGGTGTCGGTGACCACCGTTTCGCACGTG
CTCAACGGCACGCGGCACGT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTATTHPSSASAAPSVPLWRTQLGTYLGLAAVLVGMVALFSWLSDFFWSAETFVTIANEIPALAVMAVGMTFVLIIAGID
LSVGSVMALAAATSAAAILQWGWSVPAAAALALATGLVCGTITGAVSVAWRLPSFIVSLGMLEAVRGSAYLVTDSRTQYV
GDAISWLAAPVAAGVSVAFGIALLIVVLAQLVLSRTVFGRCMVGIGTNEEAMRLAGVDPRPIRIAVFALTGLLAGLGGLM
QSARLEAADPNAGAGMELQVIAAVVIGGTSLMGGRGSVVTTAFGVLIIAVLEAGLAQIGASEPSKRIITGCVIVAAVIVD
TLRQRRAAV

Sequences:

>Translated_329_residues
MTATTHPSSASAAPSVPLWRTQLGTYLGLAAVLVGMVALFSWLSDFFWSAETFVTIANEIPALAVMAVGMTFVLIIAGID
LSVGSVMALAAATSAAAILQWGWSVPAAAALALATGLVCGTITGAVSVAWRLPSFIVSLGMLEAVRGSAYLVTDSRTQYV
GDAISWLAAPVAAGVSVAFGIALLIVVLAQLVLSRTVFGRCMVGIGTNEEAMRLAGVDPRPIRIAVFALTGLLAGLGGLM
QSARLEAADPNAGAGMELQVIAAVVIGGTSLMGGRGSVVTTAFGVLIIAVLEAGLAQIGASEPSKRIITGCVIVAAVIVD
TLRQRRAAV
>Mature_328_residues
TATTHPSSASAAPSVPLWRTQLGTYLGLAAVLVGMVALFSWLSDFFWSAETFVTIANEIPALAVMAVGMTFVLIIAGIDL
SVGSVMALAAATSAAAILQWGWSVPAAAALALATGLVCGTITGAVSVAWRLPSFIVSLGMLEAVRGSAYLVTDSRTQYVG
DAISWLAAPVAAGVSVAFGIALLIVVLAQLVLSRTVFGRCMVGIGTNEEAMRLAGVDPRPIRIAVFALTGLLAGLGGLMQ
SARLEAADPNAGAGMELQVIAAVVIGGTSLMGGRGSVVTTAFGVLIIAVLEAGLAQIGASEPSKRIITGCVIVAAVIVDT
LRQRRAAV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=39.202657807309, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1788896, Length=330, Percent_Identity=30.9090909090909, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=30.1829268292683, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI145693152, Length=268, Percent_Identity=32.4626865671642, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=36.6533864541833, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI145693214, Length=272, Percent_Identity=34.1911764705882, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=42.5373134328358, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=30.2816901408451, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787794, Length=317, Percent_Identity=25.8675078864353, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788471, Length=292, Percent_Identity=31.1643835616438, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33363; Mature: 33232

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTHPSSASAAPSVPLWRTQLGTYLGLAAVLVGMVALFSWLSDFFWSAETFVTIANEI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
PALAVMAVGMTFVLIIAGIDLSVGSVMALAAATSAAAILQWGWSVPAAAALALATGLVCG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TITGAVSVAWRLPSFIVSLGMLEAVRGSAYLVTDSRTQYVGDAISWLAAPVAAGVSVAFG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
IALLIVVLAQLVLSRTVFGRCMVGIGTNEEAMRLAGVDPRPIRIAVFALTGLLAGLGGLM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
QSARLEAADPNAGAGMELQVIAAVVIGGTSLMGGRGSVVTTAFGVLIIAVLEAGLAQIGA
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SEPSKRIITGCVIVAAVIVDTLRQRRAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TATTHPSSASAAPSVPLWRTQLGTYLGLAAVLVGMVALFSWLSDFFWSAETFVTIANEI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
PALAVMAVGMTFVLIIAGIDLSVGSVMALAAATSAAAILQWGWSVPAAAALALATGLVCG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TITGAVSVAWRLPSFIVSLGMLEAVRGSAYLVTDSRTQYVGDAISWLAAPVAAGVSVAFG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
IALLIVVLAQLVLSRTVFGRCMVGIGTNEEAMRLAGVDPRPIRIAVFALTGLLAGLGGLM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
QSARLEAADPNAGAGMELQVIAAVVIGGTSLMGGRGSVVTTAFGVLIIAVLEAGLAQIGA
HHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
SEPSKRIITGCVIVAAVIVDTLRQRRAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]