Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is glyS
Identifier: 120612814
GI number: 120612814
Start: 4627546
End: 4629672
Strand: Reverse
Name: glyS
Synonym: Aave_4177
Alternate gene names: 120612814
Gene position: 4629672-4627546 (Counterclockwise)
Preceding gene: 120612815
Following gene: 120612813
Centisome position: 86.49
GC content: 70.33
Gene sequence:
>2127_bases ATGACCCATCCGAATCTTCTCGTTGAACTGTTCGTCGAAGAGCTGCCCCCGAAGGCCCTGCAGAAGCTCGGCGACGCCTT CGCCGGCGTGCTGCTCGCGCAACTGCAGGCCCAGGGCCTCGCCTCCGCCGCATCGCGCGTGACGGCCTATGCCTCGCCCC GGCGCCTGGCCGCCCACGTCACCGAGGTCGCGCCCCAGGCGGCCGACAAGGCCGTCTCGCAGAAGCTCATGCCCGTCACG GTGGGCCTGGACGCGTCCGGCAATGCCACGCCCGCGCTGCTCAAGAAGCTCGCCGCCCTGGGCGCCGACGCTTCCGCCGT GCCCGGCCTGCGCCGCGCGCCCGACGGCAAGGCGGAGGCCCTGTTCCTGGACAGCACCGTGCGCGGCGCGACCCTGTCCG AAGGGCTGCAGAAGGCCCTGCAGGAATCCGTGGCGAAACTGCCCATTCCCAAGGTGATGCGCTACCAGCTCTCCTCGGGC TGCGAACAGCCGGGCTGGACCAGCGTGAGTTTCGTGCGCCCCGCGCACGGCCTCGTGGCGCTGCATGGCACCGAGGTGCT GCTGTCCGTCTCGGTGCTGGGCCTCACGGCCGGCAATGCCACCCACGGCCACCGCTTCGAGGCGGCCGTGGACCCGGTGG TCATCCGCAGCGCCGACACCTACGCGCAGCAACTGGCCGAGGAGGGCGCCGTCATCGCCGCCTTCGCAGATCGCCGCGCC GAGATCGCCCGCCAGCTCCAGGCCGCTGCCGAGCAGGTGGGTGGCGGCGTGCGCCCCATCCAGGATGACGCGCTGCTCGA TGAAGTGACGGCCCTGGTCGAGCGCCCGAATGTGCTGGTGTGCGAATTCGAGAAGCAGTTCCTCGACGTGCCGCAGGAAT GCCTCATCCTCACGATGAAGGCCAACCAGAAGTACTTCCCGCTGCTCGATGCCGAAGGCCGTCTGACGCACCGCTTCCTC GTGGTGAGCAACATCCGCCCCGACGACGCGAGCGCCGTGGTCGGCGGCAACGAGCGCGTGGTCCGCCCGCGCCTGGCCGA TGCCAAGTTCTTCTTCGACCAGGACCGCAAGAAGACGCTCGAGTCCCGCGTAGCCTCGCTGGCCAAGGTGGTGTACCACA ACCAATTGGGCACCCAGGGCGAGCGCGTGGAGCGCGTGCGCGCCATCGCCCGGGCCATCGCCCAGCAGATCGGCGACGTG GAACTGGCCCGCCAGGCCGACCAGGCCGCGCAACTCGCCAAGGCCGACCTCGTCACCGACATGGTGGGCGAATTCCCCGA ACTGCAGGGCACCATGGGCCGCTATTACGCCCAGGCCGACGGCCTGCCCGCCGAAGTGGCCGATGCCATCGAAGACCACT ACAAGCCCCGCTTCGCGGGCGACACGCTGCCGCGCGGCGACGTGGGCGTGGTGGTGGCGCTGGCCGACAAGCTCGAAACC CTGGTCGGCATGTTCGGCATCGGCAACCTGCCCACGGGCGACCGCGACCCGTTCGCGCTGCGCCGCCACGCGCTGGGCGT GATCCGCATGCTGGTCGAGAAGGAACTCCCGCTCGACCTGGAAACCCTGCTGCACAGCGCATTGCCCGCCTTCGGGGACA AGATCCAGGACCCCACCGCGTCGCTGGCCGACTTCATCTACGACCGCCTCGCCGGCAGCCTGCGCGAGCAGGGCTACAGC GCCCAGGAAGTCGATGCCGTCCTGGCCCTGCGCCCCCAGCGCCTCGCCCTCGTCGGCAAGCAGCTGGCCGCCGTGCGTGC CTTCGCGGCGCTGCCCGAGGCCCCGGCGCTCGCCGCGGCCAACAAGCGCGTCACCAACATCCTCAAGAAGGCCGGCGACG TGGATGCGCACGTCAATCCCGACCTGCTGCGCGAGCAGGCCGAAAAGGATCTGTATGCGGCGCTGCAGCGTTTCGTGCCC GAGGCCGACGCGCTCTTCGCCGCGGGCGACTACACGGGCAGCCTGCAGACCCTGGCCGTGCTGCGCGCGCCCGTGGACGC GTTCTTCGACGACGTGATGGTCAACGCCGAGGAACTGGACCTGCGCCTGAACCGCCAGGGCCTGCTGCAGAGCCTGCACG TGGCGATGAACCGCGTGGCCGATCTCTCCCGCCTGGCCGTGGCCTGA
Upstream 100 bases:
>100_bases CGACGAAGTGCTGGCCGACATCGCCAAGGCCGAGCAGCAGCAATCGCAGAAGAAGGACGCCGCCTGAGGGCGCCGGGACC GCGGACCGAGAGACACCACC
Downstream 100 bases:
>100_bases GCCTGCATGGTCGAGCCAGCCATGCCCGTGCGCGGCGCTGCCGATGGCGCGACCCGCACCGCGTGGCTGCTGTTCACGCC GCCCGCGGCGCTCGTCGGGC
Product: glycine--tRNA ligase
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS
Number of amino acids: Translated: 708; Mature: 707
Protein sequence:
>708_residues MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVT VGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSG CEQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFL VVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDV ELARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYS AQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVP EADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA
Sequences:
>Translated_708_residues MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVT VGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSG CEQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFL VVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDV ELARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYS AQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVP EADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA >Mature_707_residues THPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVTV GLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGC EQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRAE IARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFLV VSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVE LARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLETL VGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYSA QEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPE ADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Escherichia coli, GI1789982, Length=709, Percent_Identity=41.607898448519, Blast_Score=484, Evalue=1e-138,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYGB_ACIAC (A1TUT0)
Other databases:
- EMBL: CP000512 - RefSeq: YP_972492.1 - ProteinModelPortal: A1TUT0 - STRING: A1TUT0 - GeneID: 4667770 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_4177 - NMPDR: fig|397945.5.peg.3578 - eggNOG: COG0751 - HOGENOM: HBG586599 - OMA: SFERDFL - PhylomeDB: A1TUT0 - ProtClustDB: PRK01233 - BioCyc: AAVE397945:AAVE_4177-MONOMER - GO: GO:0005737 - HAMAP: MF_00255 - InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 - PRINTS: PR01045 - SMART: SM00836 - TIGRFAMs: TIGR00211
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f
EC number: =6.1.1.14
Molecular weight: Translated: 75938; Mature: 75807
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHV CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH TEVAPQAADKAVSQKLMPVTVGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEA HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCE LFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGCEQPGWTSVSFVRPAHGLVA EEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE LHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA EECHHHHHHHHHHHEECCCCCCCCCCHHHCCCEEEECHHHHHHHHHHCCCEEEEHHHHHH EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMK HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHHEEEEEE ANQKYFPLLDAEGRLTHRFLVVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTL CCCCCCCEECCCCCCEEEEEEEECCCCCCCCEEECCCCCEECCCCCCHHHHHCCHHHHHH ESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVELARQADQAAQLAKADLVTD HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH MVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHCCCHHH SLADFIYDRLAGSLREQGYSAQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH NKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPEADALFAAGDYTGSLQTLAV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHH LRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure THPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHV CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH TEVAPQAADKAVSQKLMPVTVGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEA HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCE LFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGCEQPGWTSVSFVRPAHGLVA EEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE LHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA EECHHHHHHHHHHHEECCCCCCCCCCHHHCCCEEEECHHHHHHHHHHCCCEEEEHHHHHH EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMK HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHHEEEEEE ANQKYFPLLDAEGRLTHRFLVVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTL CCCCCCCEECCCCCCEEEEEEEECCCCCCCCEEECCCCCEECCCCCCHHHHHCCHHHHHH ESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVELARQADQAAQLAKADLVTD HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH MVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTA HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHCCCHHH SLADFIYDRLAGSLREQGYSAQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH NKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPEADALFAAGDYTGSLQTLAV HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHH LRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA