The gene/protein map for NC_008752 is currently unavailable.
Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is glyS

Identifier: 120612814

GI number: 120612814

Start: 4627546

End: 4629672

Strand: Reverse

Name: glyS

Synonym: Aave_4177

Alternate gene names: 120612814

Gene position: 4629672-4627546 (Counterclockwise)

Preceding gene: 120612815

Following gene: 120612813

Centisome position: 86.49

GC content: 70.33

Gene sequence:

>2127_bases
ATGACCCATCCGAATCTTCTCGTTGAACTGTTCGTCGAAGAGCTGCCCCCGAAGGCCCTGCAGAAGCTCGGCGACGCCTT
CGCCGGCGTGCTGCTCGCGCAACTGCAGGCCCAGGGCCTCGCCTCCGCCGCATCGCGCGTGACGGCCTATGCCTCGCCCC
GGCGCCTGGCCGCCCACGTCACCGAGGTCGCGCCCCAGGCGGCCGACAAGGCCGTCTCGCAGAAGCTCATGCCCGTCACG
GTGGGCCTGGACGCGTCCGGCAATGCCACGCCCGCGCTGCTCAAGAAGCTCGCCGCCCTGGGCGCCGACGCTTCCGCCGT
GCCCGGCCTGCGCCGCGCGCCCGACGGCAAGGCGGAGGCCCTGTTCCTGGACAGCACCGTGCGCGGCGCGACCCTGTCCG
AAGGGCTGCAGAAGGCCCTGCAGGAATCCGTGGCGAAACTGCCCATTCCCAAGGTGATGCGCTACCAGCTCTCCTCGGGC
TGCGAACAGCCGGGCTGGACCAGCGTGAGTTTCGTGCGCCCCGCGCACGGCCTCGTGGCGCTGCATGGCACCGAGGTGCT
GCTGTCCGTCTCGGTGCTGGGCCTCACGGCCGGCAATGCCACCCACGGCCACCGCTTCGAGGCGGCCGTGGACCCGGTGG
TCATCCGCAGCGCCGACACCTACGCGCAGCAACTGGCCGAGGAGGGCGCCGTCATCGCCGCCTTCGCAGATCGCCGCGCC
GAGATCGCCCGCCAGCTCCAGGCCGCTGCCGAGCAGGTGGGTGGCGGCGTGCGCCCCATCCAGGATGACGCGCTGCTCGA
TGAAGTGACGGCCCTGGTCGAGCGCCCGAATGTGCTGGTGTGCGAATTCGAGAAGCAGTTCCTCGACGTGCCGCAGGAAT
GCCTCATCCTCACGATGAAGGCCAACCAGAAGTACTTCCCGCTGCTCGATGCCGAAGGCCGTCTGACGCACCGCTTCCTC
GTGGTGAGCAACATCCGCCCCGACGACGCGAGCGCCGTGGTCGGCGGCAACGAGCGCGTGGTCCGCCCGCGCCTGGCCGA
TGCCAAGTTCTTCTTCGACCAGGACCGCAAGAAGACGCTCGAGTCCCGCGTAGCCTCGCTGGCCAAGGTGGTGTACCACA
ACCAATTGGGCACCCAGGGCGAGCGCGTGGAGCGCGTGCGCGCCATCGCCCGGGCCATCGCCCAGCAGATCGGCGACGTG
GAACTGGCCCGCCAGGCCGACCAGGCCGCGCAACTCGCCAAGGCCGACCTCGTCACCGACATGGTGGGCGAATTCCCCGA
ACTGCAGGGCACCATGGGCCGCTATTACGCCCAGGCCGACGGCCTGCCCGCCGAAGTGGCCGATGCCATCGAAGACCACT
ACAAGCCCCGCTTCGCGGGCGACACGCTGCCGCGCGGCGACGTGGGCGTGGTGGTGGCGCTGGCCGACAAGCTCGAAACC
CTGGTCGGCATGTTCGGCATCGGCAACCTGCCCACGGGCGACCGCGACCCGTTCGCGCTGCGCCGCCACGCGCTGGGCGT
GATCCGCATGCTGGTCGAGAAGGAACTCCCGCTCGACCTGGAAACCCTGCTGCACAGCGCATTGCCCGCCTTCGGGGACA
AGATCCAGGACCCCACCGCGTCGCTGGCCGACTTCATCTACGACCGCCTCGCCGGCAGCCTGCGCGAGCAGGGCTACAGC
GCCCAGGAAGTCGATGCCGTCCTGGCCCTGCGCCCCCAGCGCCTCGCCCTCGTCGGCAAGCAGCTGGCCGCCGTGCGTGC
CTTCGCGGCGCTGCCCGAGGCCCCGGCGCTCGCCGCGGCCAACAAGCGCGTCACCAACATCCTCAAGAAGGCCGGCGACG
TGGATGCGCACGTCAATCCCGACCTGCTGCGCGAGCAGGCCGAAAAGGATCTGTATGCGGCGCTGCAGCGTTTCGTGCCC
GAGGCCGACGCGCTCTTCGCCGCGGGCGACTACACGGGCAGCCTGCAGACCCTGGCCGTGCTGCGCGCGCCCGTGGACGC
GTTCTTCGACGACGTGATGGTCAACGCCGAGGAACTGGACCTGCGCCTGAACCGCCAGGGCCTGCTGCAGAGCCTGCACG
TGGCGATGAACCGCGTGGCCGATCTCTCCCGCCTGGCCGTGGCCTGA

Upstream 100 bases:

>100_bases
CGACGAAGTGCTGGCCGACATCGCCAAGGCCGAGCAGCAGCAATCGCAGAAGAAGGACGCCGCCTGAGGGCGCCGGGACC
GCGGACCGAGAGACACCACC

Downstream 100 bases:

>100_bases
GCCTGCATGGTCGAGCCAGCCATGCCCGTGCGCGGCGCTGCCGATGGCGCGACCCGCACCGCGTGGCTGCTGTTCACGCC
GCCCGCGGCGCTCGTCGGGC

Product: glycine--tRNA ligase

Products: NA

Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS

Number of amino acids: Translated: 708; Mature: 707

Protein sequence:

>708_residues
MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVT
VGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSG
CEQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA
EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFL
VVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDV
ELARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET
LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYS
AQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVP
EADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA

Sequences:

>Translated_708_residues
MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVT
VGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSG
CEQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA
EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFL
VVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDV
ELARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET
LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYS
AQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVP
EADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA
>Mature_707_residues
THPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHVTEVAPQAADKAVSQKLMPVTV
GLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEALFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGC
EQPGWTSVSFVRPAHGLVALHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRAE
IARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMKANQKYFPLLDAEGRLTHRFLV
VSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTLESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVE
LARQADQAAQLAKADLVTDMVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLETL
VGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTASLADFIYDRLAGSLREQGYSA
QEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAANKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPE
ADALFAAGDYTGSLQTLAVLRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA

Specific function: Unknown

COG id: COG0751

COG function: function code J; Glycyl-tRNA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family

Homologues:

Organism=Escherichia coli, GI1789982, Length=709, Percent_Identity=41.607898448519, Blast_Score=484, Evalue=1e-138,

Paralogues:

None

Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SYGB_ACIAC (A1TUT0)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_972492.1
- ProteinModelPortal:   A1TUT0
- STRING:   A1TUT0
- GeneID:   4667770
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_4177
- NMPDR:   fig|397945.5.peg.3578
- eggNOG:   COG0751
- HOGENOM:   HBG586599
- OMA:   SFERDFL
- PhylomeDB:   A1TUT0
- ProtClustDB:   PRK01233
- BioCyc:   AAVE397945:AAVE_4177-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00255
- InterPro:   IPR008909
- InterPro:   IPR006194
- InterPro:   IPR015944
- InterPro:   IPR002311
- PRINTS:   PR01045
- SMART:   SM00836
- TIGRFAMs:   TIGR00211

Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f

EC number: =6.1.1.14

Molecular weight: Translated: 75938; Mature: 75807

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHV
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TEVAPQAADKAVSQKLMPVTVGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEA
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCE
LFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGCEQPGWTSVSFVRPAHGLVA
EEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE
LHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA
EECHHHHHHHHHHHEECCCCCCCCCCHHHCCCEEEECHHHHHHHHHHCCCEEEEHHHHHH
EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHHEEEEEE
ANQKYFPLLDAEGRLTHRFLVVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTL
CCCCCCCEECCCCCCEEEEEEEECCCCCCCCEEECCCCCEECCCCCCHHHHHCCHHHHHH
ESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVELARQADQAAQLAKADLVTD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET
HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH
LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHCCCHHH
SLADFIYDRLAGSLREQGYSAQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPEADALFAAGDYTGSLQTLAV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHH
LRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA
HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
THPNLLVELFVEELPPKALQKLGDAFAGVLLAQLQAQGLASAASRVTAYASPRRLAAHV
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TEVAPQAADKAVSQKLMPVTVGLDASGNATPALLKKLAALGADASAVPGLRRAPDGKAEA
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCE
LFLDSTVRGATLSEGLQKALQESVAKLPIPKVMRYQLSSGCEQPGWTSVSFVRPAHGLVA
EEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEE
LHGTEVLLSVSVLGLTAGNATHGHRFEAAVDPVVIRSADTYAQQLAEEGAVIAAFADRRA
EECHHHHHHHHHHHEECCCCCCCCCCHHHCCCEEEECHHHHHHHHHHCCCEEEEHHHHHH
EIARQLQAAAEQVGGGVRPIQDDALLDEVTALVERPNVLVCEFEKQFLDVPQECLILTMK
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCHHHEEEEEE
ANQKYFPLLDAEGRLTHRFLVVSNIRPDDASAVVGGNERVVRPRLADAKFFFDQDRKKTL
CCCCCCCEECCCCCCEEEEEEEECCCCCCCCEEECCCCCEECCCCCCHHHHHCCHHHHHH
ESRVASLAKVVYHNQLGTQGERVERVRAIARAIAQQIGDVELARQADQAAQLAKADLVTD
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
MVGEFPELQGTMGRYYAQADGLPAEVADAIEDHYKPRFAGDTLPRGDVGVVVALADKLET
HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH
LVGMFGIGNLPTGDRDPFALRRHALGVIRMLVEKELPLDLETLLHSALPAFGDKIQDPTA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHCCCHHH
SLADFIYDRLAGSLREQGYSAQEVDAVLALRPQRLALVGKQLAAVRAFAALPEAPALAAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NKRVTNILKKAGDVDAHVNPDLLREQAEKDLYAALQRFVPEADALFAAGDYTGSLQTLAV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHH
LRAPVDAFFDDVMVNAEELDLRLNRQGLLQSLHVAMNRVADLSRLAVA
HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA