Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612804
Identifier: 120612804
GI number: 120612804
Start: 4620281
End: 4621024
Strand: Direct
Name: 120612804
Synonym: Aave_4167
Alternate gene names: NA
Gene position: 4620281-4621024 (Clockwise)
Preceding gene: 120612799
Following gene: 120612805
Centisome position: 86.32
GC content: 67.61
Gene sequence:
>744_bases ATGGACCGGGTCCGCCGCGCGCGGACCGGCAAGAGCACGCGACAACTATCCCCCGCCCAAGGCACAAGGGAGGCACCGAT GGCAAAGAAAGCGCCGCGGCGTACCGCGGAGCGCATCCTGGAGACAACGCTGGAGCTGTTCAACCGCTTCGGGGAACCCA ATGTGTCCACCACGGCCATCTCGGCGGAGCTGCGCATCAGCCCGGGCAACCTGTACTACCACTATCCGGCCAAGGACGAG CTGGTCACGGCGCTCTACGCGCGCTATGAAGCGGAGCTGTCCGAGCTGCTGGAGTCCGCCCCCGGGGTGCGCGACGTGGA GGATGCCCGGCTGCTGCTGCATGCGGTGCTCGAGCGCATCTGGCAGTACCGGTTCCTCTACCGGGACCTCAACGACCTGA TGTCGCGCAACCGGCATGTGGAGACGCATTTCCGGGAGCTGCTGGCGCGCAAGGCCGGCGCCATGCGTGCCATGCTGCGG GGCATGGAGCAGGCGGGCTCGCTGCGGTTCGGACCGCGGGAACTCGATACCGTGGCCGACAATCTCATGGTGGCCGTCAC GTACTGGTTGAGCTTCGAGTACGTCCGCGATCCGCGGCACGCGCTGGAGCCCTCCAATGCACGGAGCATGCTGCTGCGCG GGGCCCAGCATGTGCTGGGACTGCTGGGGCCCTACCTCACCGACGGCCAGCGCCTGCATCTCCAGGCTTTGGACGACAGC CACGCACCGGCCGATGCCGCATGA
Upstream 100 bases:
>100_bases CAGGGTGGAGGATGGCCCCTCGCAAGACCCCGCATGATGCACTGCAACAGGACGCGGAGGCTGTGGCAGGGTAGAGTGGA CCGGCAAGGGAGCGGGGAAC
Downstream 100 bases:
>100_bases TGCGGCCGCCTTTCTTCCGGACGAACGCAGGACACGCCATGCCATCCTGGACCCCCTTCCCCTATGGCGGCGAGTACGCC TTCACGACCGGCGACGTGCT
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator PhaD; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Reguator TetR Family; HTH-Type Transcriptional Regulator TetR-Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcriptional Regulator Transcription Regulator Protein; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MDRVRRARTGKSTRQLSPAQGTREAPMAKKAPRRTAERILETTLELFNRFGEPNVSTTAISAELRISPGNLYYHYPAKDE LVTALYARYEAELSELLESAPGVRDVEDARLLLHAVLERIWQYRFLYRDLNDLMSRNRHVETHFRELLARKAGAMRAMLR GMEQAGSLRFGPRELDTVADNLMVAVTYWLSFEYVRDPRHALEPSNARSMLLRGAQHVLGLLGPYLTDGQRLHLQALDDS HAPADAA
Sequences:
>Translated_247_residues MDRVRRARTGKSTRQLSPAQGTREAPMAKKAPRRTAERILETTLELFNRFGEPNVSTTAISAELRISPGNLYYHYPAKDE LVTALYARYEAELSELLESAPGVRDVEDARLLLHAVLERIWQYRFLYRDLNDLMSRNRHVETHFRELLARKAGAMRAMLR GMEQAGSLRFGPRELDTVADNLMVAVTYWLSFEYVRDPRHALEPSNARSMLLRGAQHVLGLLGPYLTDGQRLHLQALDDS HAPADAA >Mature_247_residues MDRVRRARTGKSTRQLSPAQGTREAPMAKKAPRRTAERILETTLELFNRFGEPNVSTTAISAELRISPGNLYYHYPAKDE LVTALYARYEAELSELLESAPGVRDVEDARLLLHAVLERIWQYRFLYRDLNDLMSRNRHVETHFRELLARKAGAMRAMLR GMEQAGSLRFGPRELDTVADNLMVAVTYWLSFEYVRDPRHALEPSNARSMLLRGAQHVLGLLGPYLTDGQRLHLQALDDS HAPADAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28112; Mature: 28112
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRVRRARTGKSTRQLSPAQGTREAPMAKKAPRRTAERILETTLELFNRFGEPNVSTTAI CCCHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE SAELRISPGNLYYHYPAKDELVTALYARYEAELSELLESAPGVRDVEDARLLLHAVLERI EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WQYRFLYRDLNDLMSRNRHVETHFRELLARKAGAMRAMLRGMEQAGSLRFGPRELDTVAD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NLMVAVTYWLSFEYVRDPRHALEPSNARSMLLRGAQHVLGLLGPYLTDGQRLHLQALDDS HHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC HAPADAA CCCCCCC >Mature Secondary Structure MDRVRRARTGKSTRQLSPAQGTREAPMAKKAPRRTAERILETTLELFNRFGEPNVSTTAI CCCHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE SAELRISPGNLYYHYPAKDELVTALYARYEAELSELLESAPGVRDVEDARLLLHAVLERI EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH WQYRFLYRDLNDLMSRNRHVETHFRELLARKAGAMRAMLRGMEQAGSLRFGPRELDTVAD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH NLMVAVTYWLSFEYVRDPRHALEPSNARSMLLRGAQHVLGLLGPYLTDGQRLHLQALDDS HHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC HAPADAA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA