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The map label for this gene is rnk [H]

Identifier: 120612663

GI number: 120612663

Start: 4474456

End: 4474866

Strand: Reverse

Name: rnk [H]

Synonym: Aave_4026

Alternate gene names: 120612663

Gene position: 4474866-4474456 (Counterclockwise)

Preceding gene: 120612664

Following gene: 120612660

Centisome position: 83.6

GC content: 71.29

Gene sequence:

>411_bases
ATGCATGCAGCGGTTCAGGTTCACAGCGAGCGCGTGCTCACCGATCTCGATTTCGCGCGCCTGTCGCGCCTCGCGAGCCA
GCAGCCCGCCCCCCCGTCCCTGGCGGACCTGCTGGAGAACGCGGACGTCACCAGTTCCCGGACCGTGGAAGCGGACGTGG
TCACGATGTATTCGCGCGTGGAACTCGTGGACACCGCGACCGGCGCCCGCCAGGTGCTGACGATCTGCTACCCGCGGGAT
GCCGATCTGGCGGCGGGTTTCGTCTCGGTGCTGTCGCCGGTGGGCAGCAGCCTGCTGGGCCTGCGCGTCGGGCAGACCGC
GCGGTGGTGCACCCCGCGCGGCGAGGCCTGCGAGGCCACCGTGGCGGGCATACAGCACCAGCCGGAGGCCGAGGGCGACT
ACCTGCGCTAG

Upstream 100 bases:

>100_bases
ACCCTCCGCCGCCGGGCTCCTGCCTTGCGCGAACCAACGCGGTTGCCCCTTTGCGCTGGATGGCAGCGGGCCGCCGCACC
CCACGATGGAGTGCCTTCCC

Downstream 100 bases:

>100_bases
CTGTTGAGTCTCACGAGGTTGTTCACACCCGGAATGCGTGTGATGGGAGGCTGATGGCCGAGCGCGGAGTGTGGCCGGCA
CCAGTTGTAGCCGTCAATGA

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MHAAVQVHSERVLTDLDFARLSRLASQQPAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRD
ADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQHQPEAEGDYLR

Sequences:

>Translated_136_residues
MHAAVQVHSERVLTDLDFARLSRLASQQPAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRD
ADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQHQPEAEGDYLR
>Mature_136_residues
MHAAVQVHSERVLTDLDFARLSRLASQQPAPPSLADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRD
ADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEATVAGIQHQPEAEGDYLR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=129, Percent_Identity=37.984496124031, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14565; Mature: 14565

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAAVQVHSERVLTDLDFARLSRLASQQPAPPSLADLLENADVTSSRTVEADVVTMYSRV
CCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ELVDTATGARQVLTICYPRDADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEAT
HHHHCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
VAGIQHQPEAEGDYLR
HHCCCCCCCCCCCCCC
>Mature Secondary Structure
MHAAVQVHSERVLTDLDFARLSRLASQQPAPPSLADLLENADVTSSRTVEADVVTMYSRV
CCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ELVDTATGARQVLTICYPRDADLAAGFVSVLSPVGSSLLGLRVGQTARWCTPRGEACEAT
HHHHCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
VAGIQHQPEAEGDYLR
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]