Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is gsiC [H]
Identifier: 120612639
GI number: 120612639
Start: 4441129
End: 4442139
Strand: Direct
Name: gsiC [H]
Synonym: Aave_4002
Alternate gene names: 120612639
Gene position: 4441129-4442139 (Clockwise)
Preceding gene: 120612638
Following gene: 120612640
Centisome position: 82.97
GC content: 73.49
Gene sequence:
>1011_bases ATGACCACCCGTACATCCCCCATGCCTTCTTCCTCCAGTTCCTCCTCCACCGCCGCCGAACGCATCTGGGCCCGCATGCT GCTGCGCCGGGCGCTGCAGGCCGTGGCGCTCGCGCTCATCGTCGGCACGCTGTGCTTCGCGATGGCCCGCACGCTGCCGG GCGACATGGCCACGCGCATCGCCGCCGGACGCTACGGCTACGACCTCGTGTCGAATGCCGCGGCCGCGGCGGTGCGCGGC GAACTGGGCCTGGACCGCCCTGTCTGGCAGGCGCTGCTGGCCTGGTGGGGCGACATCGTCCGGCTGGACCTGGGCACCTC CTACGTCAGCGGCGATCCGGTGTGGCGGGAGATCGCGCACCCGCTGGCCGCCACGGTCGAACTGTCGCTCGCGGCGCTGC TGATCGGCATGGCGCTGGGGCTGCCCGCCGGCATCTGGACGGGCCTGCATCCGGGCGGCCGCACCGACCGCGCCGTGGCC GCGCTGTCCGTGCTGCTGCGGGCCATGCCGCCCTTCCTGCTCGCCGTGCTGCTGATGCTGGCGATGGCCGTGCACCTGGG CATGCTGCCGGTGGCCGGCGATGACCATGCGGCCAGCCTGCTGCTGCCCGCGCTGACGCTGGGCCTGGGGCTCGCCGCGG GCCTGGCGCGGGTGTCCGGCGCCGCCATGCGACAGGCCGCCGCGTCGCCTTCGCTGGCGTTCGCCCGCTCCAAGGGGCTC ACCGACGGGCAGGCGCTGTGGCGCCACGGGCTGCCGCAGGCCGCGCTGCCGGTCGTGGCCTACCTCGGCGTGCAGGGCGT GTTCCTGGTCGAGGGGGCCGTGGTCGTGGAAACGCTCTTCGCGTGGCCCGGCATCGGGCATGCGCTGGTGCATGCCGTCT TCGGTCGCGACGTGCCGATGATCCAGGGCGCCGCCCTGTGCATGGGCCTGCTGTTCGTCTTCTTCAACCTGCTGGTGGAT GCGGCCTGCGTGGCGATCGATCCCCGGCGTTCCACCGAGGTCCGCGCATGA
Upstream 100 bases:
>100_bases CGTGGTACCGGCAGACCGTGGCCGCGAGCACGCGCGTCGGCCAGGTGCGGCTGGACCCGCTGGAGCGCTCCTACCGGCTC ACCGCGATGGAGTGGCGCGC
Downstream 100 bases:
>100_bases CCGCCGTGCCTTCGCCCCCCTCCGCACCGCCCGGCGCCTTCGACGCCGTCGCCCAGGCGCCGGTGCGTCCCGCCGCCCGC GCAGGCCGCCGCTGGGGCCT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTTRTSPMPSSSSSSSTAAERIWARMLLRRALQAVALALIVGTLCFAMARTLPGDMATRIAAGRYGYDLVSNAAAAAVRG ELGLDRPVWQALLAWWGDIVRLDLGTSYVSGDPVWREIAHPLAATVELSLAALLIGMALGLPAGIWTGLHPGGRTDRAVA ALSVLLRAMPPFLLAVLLMLAMAVHLGMLPVAGDDHAASLLLPALTLGLGLAAGLARVSGAAMRQAAASPSLAFARSKGL TDGQALWRHGLPQAALPVVAYLGVQGVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPMIQGAALCMGLLFVFFNLLVD AACVAIDPRRSTEVRA
Sequences:
>Translated_336_residues MTTRTSPMPSSSSSSSTAAERIWARMLLRRALQAVALALIVGTLCFAMARTLPGDMATRIAAGRYGYDLVSNAAAAAVRG ELGLDRPVWQALLAWWGDIVRLDLGTSYVSGDPVWREIAHPLAATVELSLAALLIGMALGLPAGIWTGLHPGGRTDRAVA ALSVLLRAMPPFLLAVLLMLAMAVHLGMLPVAGDDHAASLLLPALTLGLGLAAGLARVSGAAMRQAAASPSLAFARSKGL TDGQALWRHGLPQAALPVVAYLGVQGVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPMIQGAALCMGLLFVFFNLLVD AACVAIDPRRSTEVRA >Mature_335_residues TTRTSPMPSSSSSSSTAAERIWARMLLRRALQAVALALIVGTLCFAMARTLPGDMATRIAAGRYGYDLVSNAAAAAVRGE LGLDRPVWQALLAWWGDIVRLDLGTSYVSGDPVWREIAHPLAATVELSLAALLIGMALGLPAGIWTGLHPGGRTDRAVAA LSVLLRAMPPFLLAVLLMLAMAVHLGMLPVAGDDHAASLLLPALTLGLGLAAGLARVSGAAMRQAAASPSLAFARSKGLT DGQALWRHGLPQAALPVVAYLGVQGVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPMIQGAALCMGLLFVFFNLLVDA ACVAIDPRRSTEVRA
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=35.6209150326797, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=35.8064516129032, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=30.952380952381, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=28.8961038961039, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1787550, Length=277, Percent_Identity=25.2707581227437, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=31.2883435582822, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=25.3571428571429, Blast_Score=97, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 35003; Mature: 34872
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRTSPMPSSSSSSSTAAERIWARMLLRRALQAVALALIVGTLCFAMARTLPGDMATRI CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH AAGRYGYDLVSNAAAAAVRGELGLDRPVWQALLAWWGDIVRLDLGTSYVSGDPVWREIAH HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH PLAATVELSLAALLIGMALGLPAGIWTGLHPGGRTDRAVAALSVLLRAMPPFLLAVLLML HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH AMAVHLGMLPVAGDDHAASLLLPALTLGLGLAAGLARVSGAAMRQAAASPSLAFARSKGL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC TDGQALWRHGLPQAALPVVAYLGVQGVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPM CCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH IQGAALCMGLLFVFFNLLVDAACVAIDPRRSTEVRA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TTRTSPMPSSSSSSSTAAERIWARMLLRRALQAVALALIVGTLCFAMARTLPGDMATRI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH AAGRYGYDLVSNAAAAAVRGELGLDRPVWQALLAWWGDIVRLDLGTSYVSGDPVWREIAH HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH PLAATVELSLAALLIGMALGLPAGIWTGLHPGGRTDRAVAALSVLLRAMPPFLLAVLLML HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH AMAVHLGMLPVAGDDHAASLLLPALTLGLGLAAGLARVSGAAMRQAAASPSLAFARSKGL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC TDGQALWRHGLPQAALPVVAYLGVQGVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPM CCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH IQGAALCMGLLFVFFNLLVDAACVAIDPRRSTEVRA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA