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The map label for this gene is qseB [H]

Identifier: 120612603

GI number: 120612603

Start: 4393989

End: 4394648

Strand: Reverse

Name: qseB [H]

Synonym: Aave_3964

Alternate gene names: 120612603

Gene position: 4394648-4393989 (Counterclockwise)

Preceding gene: 120612604

Following gene: 120612602

Centisome position: 82.1

GC content: 70.15

Gene sequence:

>660_bases
ATGCGCCTTCTGCTGGTGGAAGACGACACGATGATCGGCGAAGCCGTGTATGACCTGCTGCGCGCGGAGCAGCACGCGGT
GGACTGGGTGCGCGACGGCGAGATGGCCGATACGGCGCTGCGCACGCAGACCTACGACGTGGTGCTGCTGGACCTGGGCC
TGCCGCGCCGCGACGGCCTGCAGGTGCTGCGCGATCTGCGCGCGCGCAAGGACCGCACGCCGGTGCTGGTGGCCACGGCG
CGCGACGCGGTGGCCCAGCGCGTGCAGGGCCTGGACGCGGGCGCCGACGACTACGTGCTCAAGCCCTATGAACTGGACGA
ACTGCTGGCGCGCATCCGGGCACTGGCGCGGCGCGCGGCAGGGCGGGCCGAGCCGGTCTATGAGCACAAGGGCGTGAGCA
TCGATCCGGCCACGCGCGAGGTCACCGTGAACGGCGAGCCGGTGGTGTTGTCCGGGCGCGAATGGGCGGTGCTGGAGCCG
CTCATCGCCCGCCCGGGGCGCGTGCTCTCGCGCGCGCAGCTCGAGGAAAAGCTCTACAGCTGGAAGGACGAGATCAGCAG
CAATGCGGTCGAGGTCTATATCCACGGGCTGCGCAAGAAGCTCGGCGCGGACCTGGTGCTGAACGTGCGCGGCGTGGGCT
ACATGGTGCCGAAGGTATGA

Upstream 100 bases:

>100_bases
CGGCGCGGCGGGGCCTGCCGCTATCCTTGGCGGATGGCGCCGGGCCCCGGCCTGCTCCCGGCCGGCGCGAGAACGAACCT
ACCTTTCGAGGACACCTGCC

Downstream 100 bases:

>100_bases
GCGGAGCGGTGGACAGCGGCCCGGGCGAGGGGCACGGCGAGGCGTCGGCCGGTGCCTCCACGCCGGCCGCCCGCGCGCGC
CGCCGCGACCGCTGGATGGA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRLLLVEDDTMIGEAVYDLLRAEQHAVDWVRDGEMADTALRTQTYDVVLLDLGLPRRDGLQVLRDLRARKDRTPVLVATA
RDAVAQRVQGLDAGADDYVLKPYELDELLARIRALARRAAGRAEPVYEHKGVSIDPATREVTVNGEPVVLSGREWAVLEP
LIARPGRVLSRAQLEEKLYSWKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPKV

Sequences:

>Translated_219_residues
MRLLLVEDDTMIGEAVYDLLRAEQHAVDWVRDGEMADTALRTQTYDVVLLDLGLPRRDGLQVLRDLRARKDRTPVLVATA
RDAVAQRVQGLDAGADDYVLKPYELDELLARIRALARRAAGRAEPVYEHKGVSIDPATREVTVNGEPVVLSGREWAVLEP
LIARPGRVLSRAQLEEKLYSWKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPKV
>Mature_219_residues
MRLLLVEDDTMIGEAVYDLLRAEQHAVDWVRDGEMADTALRTQTYDVVLLDLGLPRRDGLQVLRDLRARKDRTPVLVATA
RDAVAQRVQGLDAGADDYVLKPYELDELLARIRALARRAAGRAEPVYEHKGVSIDPATREVTVNGEPVVLSGREWAVLEP
LIARPGRVLSRAQLEEKLYSWKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPKV

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=48.6111111111111, Blast_Score=210, Evalue=6e-56,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=40.7407407407407, Blast_Score=170, Evalue=5e-44,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=35.9090909090909, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=35.2941176470588, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=33.9449541284404, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=37.10407239819, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=32.7272727272727, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=31.7180616740088, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790860, Length=217, Percent_Identity=34.5622119815668, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1787229, Length=222, Percent_Identity=32.8828828828829, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=31.5789473684211, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786911, Length=180, Percent_Identity=36.1111111111111, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=26.8722466960352, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788550, Length=132, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790437, Length=123, Percent_Identity=34.1463414634146, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24473; Mature: 24473

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDDTMIGEAVYDLLRAEQHAVDWVRDGEMADTALRTQTYDVVLLDLGLPRRDGL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEECCCCCHHHH
QVLRDLRARKDRTPVLVATARDAVAQRVQGLDAGADDYVLKPYELDELLARIRALARRAA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRAEPVYEHKGVSIDPATREVTVNGEPVVLSGREWAVLEPLIARPGRVLSRAQLEEKLYS
CCCCCCHHCCCCEECCCCEEEEECCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
WKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPKV
HHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCC
>Mature Secondary Structure
MRLLLVEDDTMIGEAVYDLLRAEQHAVDWVRDGEMADTALRTQTYDVVLLDLGLPRRDGL
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEEECCCCCHHHH
QVLRDLRARKDRTPVLVATARDAVAQRVQGLDAGADDYVLKPYELDELLARIRALARRAA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRAEPVYEHKGVSIDPATREVTVNGEPVVLSGREWAVLEPLIARPGRVLSRAQLEEKLYS
CCCCCCHHCCCCEECCCCEEEEECCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
WKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPKV
HHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]