Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is qseC [H]
Identifier: 120612602
GI number: 120612602
Start: 4392466
End: 4393893
Strand: Reverse
Name: qseC [H]
Synonym: Aave_3963
Alternate gene names: 120612602
Gene position: 4393893-4392466 (Counterclockwise)
Preceding gene: 120612603
Following gene: 120612601
Centisome position: 82.09
GC content: 75.49
Gene sequence:
>1428_bases ATGGACGCCCTGTCCGCGCGCGCGCCGCATTCGCTGCGGGCGCGGCTGCTGTGCTTCCTGTTCGTGGCGATCGTCTGCGC GGCGCTGCTGCAGTTCGCGCTCGCCTACCGCTCGGCGCTGGCCGAGGCGGACCAGATTTTCGACTACCACATGCAGCAGA CGGCGATGGCGCTGCGCCCCGGCGTGCCGGCCATGGCGGAGGGCACGCCGGAGCCGCTGGAGCAGGAGGAGGAGGAGGAG AGTACCGAGTTCGTGGTGCAGATCTGGTCGTCCGACGGGTTGCGGGTGTTCGAATCGTCCGTGGGCGCGGCGCTGCCGCA GCGCGCGGTGCTGGGTTTCTCGAACGTGCGCGCGCACGGCACCACCTACCGCGTGTTCTCTGTGCAGACGCGCTCGCAGG TGATCCAGGTGGCGCAGGACATGGCCGCGCGCCGCGAGATGGCGCGCGACCTGGCCTGGCGCACGGCGGGGCCGATCGCG CTGCTGGCGCCCCTGCTGGCGCTGGCCGTGTGGTGGGCGGTGAGCGGCTCGCTCGCGCCGGTGGAGCGGGTGCGGCGGCA ACTGGCGAAGCGGCAGGCGGACGACCTGTCGCCCGTGCATGCGGGCGCGCTGCCGGACGAGGTGCGGCCGATGGTGGACG AGCTGAACCTGCTGTTCGAGCGCGTGCGCCGGGCCTTCGAGGCGCAGCAGCATTTCGTGGCGGATGCGGCGCACGAGCTG CGCTCGCCGCTGGCGGCGCTCAAGCTGCAGCTGCAGGGCCTGCAGCGCGCGGGCAGCGAAGAGGCGCGCGCGGTGGCGGC GGGGCGGCTCGCGGCCGGCATCGACCGTGCCACGCGCCTCGTGGAGCAGTTGCTGGCCCTGGCGCGGCAGGAGGCCAGCG CCGCCGCCGGCACGCCGCCCGAGCCCGTGCCCCTGGCCGGCCTCGCCCGGCAGGCCGTGGCCGATGCCACGCCGGCCGCG CAGCACAAGAACATCGACCTGGGCCTGGTGACCGGCGACGCGGTGGCGGTGCTGGGGTATGCGGATGCGCTGCGCATCCT GCTGCGCAACCTGGTGGACAACGCCGTGAAGTACACGCCCGACGGCGGCGTGGTGGACGTACACGTGCGCGAAGTGACCG CAGGTCCGGGGCCTGCCGGCGTGGAGCTGGTGGTGGAAGACAGCGGCCCCGGGATCGCCGAGGACGACCGCGAGCGCGTG CTGGGGCGCTTCTACCGCGCGCCCGCGGCGGCCGGCAGCGCGCCGGTGGGGGGCAGCGGGCTGGGCCTGGCGATCGTGGA GTCGATCGCGCGGCTGCATGGCGCTGCGGTAGCGCTGGACGCCTCGCCGCGCCTGGGCGGGCTGCGCGTGGCGGTGCGCT TCGCGGTGGCGGCCGGCGTTCCGGCGCTGCCGGGCGGGGGCACGGGGGGCCCGGGGGGCGGCGCTTGA
Upstream 100 bases:
>100_bases TATGAGCGGAGCGGTGGACAGCGGCCCGGGCGAGGGGCACGGCGAGGCGTCGGCCGGTGCCTCCACGCCGGCCGCCCGCG CGCGCCGCCGCGACCGCTGG
Downstream 100 bases:
>100_bases CGCGCTTCGCGCTGCTTTCGGGCCTGGGGCATGCGGTTTTCGTGGCCGTGGGCCTGCTGATCTACGTGATGGCCACGCGC ATCGGCCGCCAGCGCCGCCA
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MDALSARAPHSLRARLLCFLFVAIVCAALLQFALAYRSALAEADQIFDYHMQQTAMALRPGVPAMAEGTPEPLEQEEEEE STEFVVQIWSSDGLRVFESSVGAALPQRAVLGFSNVRAHGTTYRVFSVQTRSQVIQVAQDMAARREMARDLAWRTAGPIA LLAPLLALAVWWAVSGSLAPVERVRRQLAKRQADDLSPVHAGALPDEVRPMVDELNLLFERVRRAFEAQQHFVADAAHEL RSPLAALKLQLQGLQRAGSEEARAVAAGRLAAGIDRATRLVEQLLALARQEASAAAGTPPEPVPLAGLARQAVADATPAA QHKNIDLGLVTGDAVAVLGYADALRILLRNLVDNAVKYTPDGGVVDVHVREVTAGPGPAGVELVVEDSGPGIAEDDRERV LGRFYRAPAAAGSAPVGGSGLGLAIVESIARLHGAAVALDASPRLGGLRVAVRFAVAAGVPALPGGGTGGPGGGA
Sequences:
>Translated_475_residues MDALSARAPHSLRARLLCFLFVAIVCAALLQFALAYRSALAEADQIFDYHMQQTAMALRPGVPAMAEGTPEPLEQEEEEE STEFVVQIWSSDGLRVFESSVGAALPQRAVLGFSNVRAHGTTYRVFSVQTRSQVIQVAQDMAARREMARDLAWRTAGPIA LLAPLLALAVWWAVSGSLAPVERVRRQLAKRQADDLSPVHAGALPDEVRPMVDELNLLFERVRRAFEAQQHFVADAAHEL RSPLAALKLQLQGLQRAGSEEARAVAAGRLAAGIDRATRLVEQLLALARQEASAAAGTPPEPVPLAGLARQAVADATPAA QHKNIDLGLVTGDAVAVLGYADALRILLRNLVDNAVKYTPDGGVVDVHVREVTAGPGPAGVELVVEDSGPGIAEDDRERV LGRFYRAPAAAGSAPVGGSGLGLAIVESIARLHGAAVALDASPRLGGLRVAVRFAVAAGVPALPGGGTGGPGGGA >Mature_475_residues MDALSARAPHSLRARLLCFLFVAIVCAALLQFALAYRSALAEADQIFDYHMQQTAMALRPGVPAMAEGTPEPLEQEEEEE STEFVVQIWSSDGLRVFESSVGAALPQRAVLGFSNVRAHGTTYRVFSVQTRSQVIQVAQDMAARREMARDLAWRTAGPIA LLAPLLALAVWWAVSGSLAPVERVRRQLAKRQADDLSPVHAGALPDEVRPMVDELNLLFERVRRAFEAQQHFVADAAHEL RSPLAALKLQLQGLQRAGSEEARAVAAGRLAAGIDRATRLVEQLLALARQEASAAAGTPPEPVPLAGLARQAVADATPAA QHKNIDLGLVTGDAVAVLGYADALRILLRNLVDNAVKYTPDGGVVDVHVREVTAGPGPAGVELVVEDSGPGIAEDDRERV LGRFYRAPAAAGSAPVGGSGLGLAIVESIARLHGAAVALDASPRLGGLRVAVRFAVAAGVPALPGGGTGGPGGGA
Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. May activate qseB by phosphorylation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1789403, Length=467, Percent_Identity=32.5481798715203, Blast_Score=170, Evalue=2e-43, Organism=Escherichia coli, GI1790551, Length=298, Percent_Identity=30.5369127516779, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI1788393, Length=279, Percent_Identity=30.4659498207885, Blast_Score=116, Evalue=4e-27, Organism=Escherichia coli, GI1786600, Length=216, Percent_Identity=35.1851851851852, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786783, Length=303, Percent_Identity=31.023102310231, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1790346, Length=241, Percent_Identity=29.8755186721992, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1787374, Length=312, Percent_Identity=26.6025641025641, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1790861, Length=296, Percent_Identity=30.0675675675676, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1787894, Length=255, Percent_Identity=29.8039215686275, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1789149, Length=244, Percent_Identity=27.4590163934426, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1790436, Length=215, Percent_Identity=30.6976744186047, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788713, Length=248, Percent_Identity=24.1935483870968, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI87082128, Length=326, Percent_Identity=28.5276073619632, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1789808, Length=244, Percent_Identity=25.8196721311475, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 49782; Mature: 49782
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDALSARAPHSLRARLLCFLFVAIVCAALLQFALAYRSALAEADQIFDYHMQQTAMALRP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVPAMAEGTPEPLEQEEEEESTEFVVQIWSSDGLRVFESSVGAALPQRAVLGFSNVRAHG CCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCHHHHHCHHHHCCCC TTYRVFSVQTRSQVIQVAQDMAARREMARDLAWRTAGPIALLAPLLALAVWWAVSGSLAP CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH VERVRRQLAKRQADDLSPVHAGALPDEVRPMVDELNLLFERVRRAFEAQQHFVADAAHEL HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSPLAALKLQLQGLQRAGSEEARAVAAGRLAAGIDRATRLVEQLLALARQEASAAAGTPP HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EPVPLAGLARQAVADATPAAQHKNIDLGLVTGDAVAVLGYADALRILLRNLVDNAVKYTP CCCCHHHHHHHHHHCCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC DGGVVDVHVREVTAGPGPAGVELVVEDSGPGIAEDDRERVLGRFYRAPAAAGSAPVGGSG CCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC LGLAIVESIARLHGAAVALDASPRLGGLRVAVRFAVAAGVPALPGGGTGGPGGGA HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDALSARAPHSLRARLLCFLFVAIVCAALLQFALAYRSALAEADQIFDYHMQQTAMALRP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GVPAMAEGTPEPLEQEEEEESTEFVVQIWSSDGLRVFESSVGAALPQRAVLGFSNVRAHG CCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCHHHHHCHHHHCCCC TTYRVFSVQTRSQVIQVAQDMAARREMARDLAWRTAGPIALLAPLLALAVWWAVSGSLAP CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCH VERVRRQLAKRQADDLSPVHAGALPDEVRPMVDELNLLFERVRRAFEAQQHFVADAAHEL HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSPLAALKLQLQGLQRAGSEEARAVAAGRLAAGIDRATRLVEQLLALARQEASAAAGTPP HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EPVPLAGLARQAVADATPAAQHKNIDLGLVTGDAVAVLGYADALRILLRNLVDNAVKYTP CCCCHHHHHHHHHHCCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECC DGGVVDVHVREVTAGPGPAGVELVVEDSGPGIAEDDRERVLGRFYRAPAAAGSAPVGGSG CCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC LGLAIVESIARLHGAAVALDASPRLGGLRVAVRFAVAAGVPALPGGGTGGPGGGA HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796; 11929534 [H]