Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is pcaR [H]
Identifier: 120612586
GI number: 120612586
Start: 4372564
End: 4373367
Strand: Direct
Name: pcaR [H]
Synonym: Aave_3947
Alternate gene names: 120612586
Gene position: 4372564-4373367 (Clockwise)
Preceding gene: 120612575
Following gene: 120612587
Centisome position: 81.69
GC content: 69.03
Gene sequence:
>804_bases ATGAGCGATACCCCCACGGATATTGGTAAAAACCCTAGGCCGGGCGACAGCTACGTGCAGTCGTTCGCCCGCGGGCTGGA AGTGATCCGTTCCTTCAGCGCCGCCGCGCCGCAGCAGACGTTGAGCGAAGTAGCGGCCTCATCGGGCCTCACGCGTGCGG GGGCGCGCCGCATCCTGCTCACGCTGCAGACGCTGGGCTACGTGGAAAGCGACGGGCGGCTGTTCCGCCTCACGCCGCGC ATCATGGACCTGGGTTTCGCCTACCTCTCGTCCATGCCCATCTGGGATCTCGCGGAGCCCTCCATGGAAGCGCTGGCCGG CGAGGTGCGCGAATCGTGCTCGGCCGCCGTGCTGGACGGGCACGACATCGTCTATGTGCTGCGCATCCACACCCACAAGA TCATGAGCACCAACCTGGGCGTGGGCTCGCGCCTGCCCGCGTTCTGGACGTCCATGGGCCGCATGCTGCTGGCCGGCCTG CCCGACGAGCGCGTCATCGCGCTCATGAACGACCTGCCACGCAAGCGCTTCACGCCGCGCACCGTGGTCGAGGACGCGGA ACTGCTCGCCCGTGTGCAGACCGCCCGCGCGCAGGGCTGGTGCCTGATCGACCAGGAACTGGAGGAAGGGCTGATCTCTG TCGCCGCCCCGCTGCGCGACCGCGCCGGCCGCACGGTGGCCGCGCTCAACATCAGCGGACAGGCCAACCGCACCAGCGCG AAGGTGATGCAGCGCGACCTGCTGCCCGTACTGCTGCGCACGGCCGACACCATCTCTGGGCTGCTGGGCACGCGGCGCGG CTGA
Upstream 100 bases:
>100_bases GGCCCCGCGAGCGGGAGGCAACCGGCTGCCCGGTTGCGAAATTTTGTTCGCGTAAAGAACAAATGTTCGTACAATGAATT AATTCTAGAACCAACGGCTT
Downstream 100 bases:
>100_bases GGCCGCGCCCCCCGCGCGGCCCCCTTCAGCCCGACAGTTCCGTAACACAATCCCGGCCCCGGTGGGCCTGCGCCGGCCGG CGGCTTCGCATTCCGCGCGA
Product: IclR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MSDTPTDIGKNPRPGDSYVQSFARGLEVIRSFSAAAPQQTLSEVAASSGLTRAGARRILLTLQTLGYVESDGRLFRLTPR IMDLGFAYLSSMPIWDLAEPSMEALAGEVRESCSAAVLDGHDIVYVLRIHTHKIMSTNLGVGSRLPAFWTSMGRMLLAGL PDERVIALMNDLPRKRFTPRTVVEDAELLARVQTARAQGWCLIDQELEEGLISVAAPLRDRAGRTVAALNISGQANRTSA KVMQRDLLPVLLRTADTISGLLGTRRG
Sequences:
>Translated_267_residues MSDTPTDIGKNPRPGDSYVQSFARGLEVIRSFSAAAPQQTLSEVAASSGLTRAGARRILLTLQTLGYVESDGRLFRLTPR IMDLGFAYLSSMPIWDLAEPSMEALAGEVRESCSAAVLDGHDIVYVLRIHTHKIMSTNLGVGSRLPAFWTSMGRMLLAGL PDERVIALMNDLPRKRFTPRTVVEDAELLARVQTARAQGWCLIDQELEEGLISVAAPLRDRAGRTVAALNISGQANRTSA KVMQRDLLPVLLRTADTISGLLGTRRG >Mature_266_residues SDTPTDIGKNPRPGDSYVQSFARGLEVIRSFSAAAPQQTLSEVAASSGLTRAGARRILLTLQTLGYVESDGRLFRLTPRI MDLGFAYLSSMPIWDLAEPSMEALAGEVRESCSAAVLDGHDIVYVLRIHTHKIMSTNLGVGSRLPAFWTSMGRMLLAGLP DERVIALMNDLPRKRFTPRTVVEDAELLARVQTARAQGWCLIDQELEEGLISVAAPLRDRAGRTVAALNISGQANRTSAK VMQRDLLPVLLRTADTISGLLGTRRG
Specific function: Positive regulator of all genes within the pca regulon, pcaBDC, pcaIJ and pcaF. Also required for the chemotactic response to aromatic compounds [H]
COG id: COG1414
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]
Homologues:
Organism=Escherichia coli, GI1788131, Length=225, Percent_Identity=29.3333333333333, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786468, Length=222, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI87082359, Length=243, Percent_Identity=26.7489711934156, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786715, Length=240, Percent_Identity=25, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789999, Length=259, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012794 - InterPro: IPR014757 - InterPro: IPR005471 - InterPro: IPR011991 [H]
Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]
EC number: NA
Molecular weight: Translated: 29057; Mature: 28926
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTPTDIGKNPRPGDSYVQSFARGLEVIRSFSAAAPQQTLSEVAASSGLTRAGARRILL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH TLQTLGYVESDGRLFRLTPRIMDLGFAYLSSMPIWDLAEPSMEALAGEVRESCSAAVLDG HHHHHCEECCCCEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCEEEECC HDIVYVLRIHTHKIMSTNLGVGSRLPAFWTSMGRMLLAGLPDERVIALMNDLPRKRFTPR CCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCH TVVEDAELLARVQTARAQGWCLIDQELEEGLISVAAPLRDRAGRTVAALNISGQANRTSA HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH KVMQRDLLPVLLRTADTISGLLGTRRG HHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDTPTDIGKNPRPGDSYVQSFARGLEVIRSFSAAAPQQTLSEVAASSGLTRAGARRILL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH TLQTLGYVESDGRLFRLTPRIMDLGFAYLSSMPIWDLAEPSMEALAGEVRESCSAAVLDG HHHHHCEECCCCEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCEEEECC HDIVYVLRIHTHKIMSTNLGVGSRLPAFWTSMGRMLLAGLPDERVIALMNDLPRKRFTPR CCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCH TVVEDAELLARVQTARAQGWCLIDQELEEGLISVAAPLRDRAGRTVAALNISGQANRTSA HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH KVMQRDLLPVLLRTADTISGLLGTRRG HHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8083169 [H]