Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is pcaI [H]
Identifier: 120612585
GI number: 120612585
Start: 4371702
End: 4372403
Strand: Reverse
Name: pcaI [H]
Synonym: Aave_3946
Alternate gene names: 120612585
Gene position: 4372403-4371702 (Counterclockwise)
Preceding gene: 120612590
Following gene: 120612584
Centisome position: 81.68
GC content: 69.37
Gene sequence:
>702_bases ATGATCAACAAGATTGCGGATTCCGTCGCCCAGGCCCTGTCGGGCATCCAGGACGGCGCCACGGTGCTCGTCGGCGGCTT CGGCACGGCCGGCATTCCCGGCGAACTGATCGACGGACTGATCGAGCAGGGCGCCCGTGACCTCACGGTGGTCAACAACA ACGCCGGCAACGGCGACACGGGCCTGGCCGCGCTGCTCAAGACGGGCCGCGTGCGCAAGATCATCTGCAGCTTCCCCCGG CAGGTGGATAGCTGGGTGTTCGACGATCTGTACCGCTCCGGCAAGCTGGAGCTGGAACTGGTGCCGCAGGGCAACCTCGC CGAGCGCCTGCGCGCGGCCGGGGCCGGCATCGGCGCCTTTTTCTGCCCGACGGCCTACGGCACCGAGCTGGCGAAGGGCA AGGAAACGCGCGAGATCGGCGGCAGGCATTACGTGCTGGAGTACCCCATCCACGGCGACGTGGCCCTCGTCAAGGCCGAG CGGGGCGACCGCTGGGGCAACCTGACCTACCGCATGTCCGCGCGCAATTTCGGCCCCGTGATGGCCACGGCCGCGAGGCA GACCATCGCCACGGTGCACGAGATCGCGGAGCTGGGCGCGCTGGACCCCGAGGCCATCGTGACCCCCGGCATCTTCGTGA GCCGCATCGTGCGCATCGAGCGCACCGCCACCCAGGGCGCGGGCTTCAGGAAGCCTGCCTGA
Upstream 100 bases:
>100_bases TTCGCAACCGGGCAGCCGGTTGCCTCCCGCTCGCGGGGCCGGATTGTCGCCGTGCGGCACCGCGGTCCGGCCTTTGCTCC CCTTCCAGGTTTTTCTTCCC
Downstream 100 bases:
>100_bases GCCCGGCATCGCATCGGAATTGAACAGGCCACCAGCGCAGAAGGAATCAGCGTGAGCAGCTATCAGAAACGCAGCAAAGA CGAACTGGCCCGGCGTGTGG
Product: 3-oxoacid CoA-transferase subunit A
Products: NA
Alternate protein names: Beta-ketoadipate:succinyl-CoA transferase subunit A [H]
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MINKIADSVAQALSGIQDGATVLVGGFGTAGIPGELIDGLIEQGARDLTVVNNNAGNGDTGLAALLKTGRVRKIICSFPR QVDSWVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAFFCPTAYGTELAKGKETREIGGRHYVLEYPIHGDVALVKAE RGDRWGNLTYRMSARNFGPVMATAARQTIATVHEIAELGALDPEAIVTPGIFVSRIVRIERTATQGAGFRKPA
Sequences:
>Translated_233_residues MINKIADSVAQALSGIQDGATVLVGGFGTAGIPGELIDGLIEQGARDLTVVNNNAGNGDTGLAALLKTGRVRKIICSFPR QVDSWVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAFFCPTAYGTELAKGKETREIGGRHYVLEYPIHGDVALVKAE RGDRWGNLTYRMSARNFGPVMATAARQTIATVHEIAELGALDPEAIVTPGIFVSRIVRIERTATQGAGFRKPA >Mature_233_residues MINKIADSVAQALSGIQDGATVLVGGFGTAGIPGELIDGLIEQGARDLTVVNNNAGNGDTGLAALLKTGRVRKIICSFPR QVDSWVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAFFCPTAYGTELAKGKETREIGGRHYVLEYPIHGDVALVKAE RGDRWGNLTYRMSARNFGPVMATAARQTIATVHEIAELGALDPEAIVTPGIFVSRIVRIERTATQGAGFRKPA
Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]
COG id: COG1788
COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-oxoacid CoA-transferase subunit A family [H]
Homologues:
Organism=Homo sapiens, GI4557817, Length=229, Percent_Identity=44.9781659388646, Blast_Score=193, Evalue=1e-49, Organism=Homo sapiens, GI11545841, Length=241, Percent_Identity=43.9834024896266, Blast_Score=171, Evalue=4e-43, Organism=Escherichia coli, GI1788551, Length=205, Percent_Identity=42.9268292682927, Blast_Score=172, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17531517, Length=252, Percent_Identity=40.8730158730159, Blast_Score=179, Evalue=1e-45, Organism=Drosophila melanogaster, GI24655794, Length=233, Percent_Identity=41.6309012875536, Blast_Score=181, Evalue=4e-46, Organism=Drosophila melanogaster, GI21358325, Length=233, Percent_Identity=41.6309012875536, Blast_Score=181, Evalue=4e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012792 - InterPro: IPR004165 - InterPro: IPR004163 [H]
Pfam domain/function: PF01144 CoA_trans [H]
EC number: =2.8.3.6 [H]
Molecular weight: Translated: 24761; Mature: 24761
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: PS01273 COA_TRANSF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINKIADSVAQALSGIQDGATVLVGGFGTAGIPGELIDGLIEQGARDLTVVNNNAGNGDT CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHH GLAALLKTGRVRKIICSFPRQVDSWVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAF HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCHH FCPTAYGTELAKGKETREIGGRHYVLEYPIHGDVALVKAERGDRWGNLTYRMSARNFGPV HCCCHHCHHHHCCCHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCHH MATAARQTIATVHEIAELGALDPEAIVTPGIFVSRIVRIERTATQGAGFRKPA HHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MINKIADSVAQALSGIQDGATVLVGGFGTAGIPGELIDGLIEQGARDLTVVNNNAGNGDT CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHH GLAALLKTGRVRKIICSFPRQVDSWVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAF HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCHH FCPTAYGTELAKGKETREIGGRHYVLEYPIHGDVALVKAERGDRWGNLTYRMSARNFGPV HCCCHHCHHHHCCCHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCHH MATAARQTIATVHEIAELGALDPEAIVTPGIFVSRIVRIERTATQGAGFRKPA HHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1624453; 6780551 [H]