Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is atoE [H]
Identifier: 120612578
GI number: 120612578
Start: 4365262
End: 4366599
Strand: Reverse
Name: atoE [H]
Synonym: Aave_3939
Alternate gene names: 120612578
Gene position: 4366599-4365262 (Counterclockwise)
Preceding gene: 120612579
Following gene: 120612577
Centisome position: 81.58
GC content: 65.92
Gene sequence:
>1338_bases ATGTCGAAAATCACCGCTTTCTTCACCGAACTGATGCGGCGCTACCTGCCCGATCCGTTCGTCTTCGCGATCCTGCTCAC GCTGCTGACCATGGCGCTCGCCTTCGGCGTGGAGAGCCGCCCGATCGATGCCGTGGTGCAGGACTGGGGCAAGGGCTTCT GGAGCCTGCTGGCCTTCACGACGCAGATGGCCGTGATCCTGGTGATGGGCTACGTGCTGGCGGCCGCGCCCATCGTGGAC CGTTTCCTCGACCGCATCGCCGCGCGCGTGAGCACGCCGCGCCAGGCCATCATCGTCGCGACCCTCGTGGGCGGCGTGGG CAGCTACCTCAACTGGGGCTTCGGCCTGGTGATCGGCGGCATCATGGCGCGCAAGCTGGCGCTGAAGGTGAAGGGCGTGC ACTATCCGCTGATCATCGCGGCCGCCTACACGGGCTTCACCATGTACAGCCTGGGCTTCTCGGCGACGATCCCCGTGCTC ATCTCCACCAAGGGCCATGCCTTCGAGGGCACGATGGGCCTGATCCCGCTCACGCAGACGATCTTCTCCGCGCCCATCCT GCTCACCAGCCTGGCCGTGCTGGTCGCGCTGCCGCTGCTCAATGCCGCCATGCATCCCAGGCAGGGCGAGAAGGTGGTCG AGCTGGACCCGGCCACCGTGGCGGAGGCCAGGCCCGCCGCCAGCGCAGAGGGGCTGCTGGGCGACGAGAAGACGCTGGCC TGGCGCCTCAACAACAGCCGCATGCTGAGCCTGCTGATCGGCCTGTGCGGCATGGCGTACGTGGTCATGCACTTCGTGCG CGGCGGCAACCTCGACCTGAACATGATCAACTTCTTCATCCTGTTCCTCGGGGTGCTGCTGCTGGGCACGCCGATGAAGT ACGTGGAGAAGGTCAACGAGGGCGTGAAGACGATCGGCGGGATCATCCTGCAGTTCCCGTTCTACGCCGGCATCATGGCG ATCATGCACGGCTCGGGGCTGGTGGAATCGATCGCGCACGTGTTCGTGAACATCTCCACCGCGGCCACGCTGCCGCTCTG GGGCCTCGTCAGTTCCTTCGTGATCAACTTCTTCGCGCCCTCGGGCGGCGGCCACTGGGTGCTGCAGGGCCCGTTCATGA TCAACGCGGCCACCACCCTCGGCGCGTCGCAGGCGCAGACGGCCATGTCGGTGATGCTGGGCAACGGCTGGAACGACCTC GTGCAGCCGTTCTGGATCCTGCCGGCGCTGGCGCTGTCCAAGCTCAAGCTGAAAGACATCATGGGCTACACGGTGGTTTC CATGCTGCTCGTGGGCGCCATCTACGCCGTGACCATGCTGGTCTGGCCGGACCTCTGA
Upstream 100 bases:
>100_bases ATGACGGTAGGGGTGGCCGGGGTCTGACGGCGGCCGTTCGTCCCCCAGCTCCACCTTCGTTTTCTCAGAAATCCACACAA CACCAAAGAGACAACTCCCC
Downstream 100 bases:
>100_bases TCGCTTCTCCCTTTTTGTTTTCGCCTCTTCCCTTTTTCTCAAGGAGCAACCCATGCTGTTCATGGCCGAAATGACCGTCC GCATCCCGTCCACGCTCGCC
Product: short chain fatty acid transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVD RFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVL ISTKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMA IMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDL VQPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL
Sequences:
>Translated_445_residues MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVD RFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVL ISTKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMA IMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDL VQPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL >Mature_444_residues SKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFTTQMAVILVMGYVLAAAPIVDR FLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGGIMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLI STKGHAFEGTMGLIPLTQTIFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLAW RLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNEGVKTIGGIILQFPFYAGIMAI MHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAPSGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLV QPFWILPALALSKLKLKDIMGYTVVSMLLVGAIYAVTMLVWPDL
Specific function: Responsible for the intake of short-chain fatty acids [H]
COG id: COG2031
COG function: function code I; Short chain fatty acids transporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788553, Length=438, Percent_Identity=41.0958904109589, Blast_Score=350, Evalue=1e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006161 - InterPro: IPR006160 [H]
Pfam domain/function: PF02667 SCFA_trans [H]
EC number: NA
Molecular weight: Translated: 47860; Mature: 47729
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFT CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH TQMAVILVMGYVLAAAPIVDRFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLISTKGHAFEGTMGLIPLTQT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEECCCCCCCCCCCHHHHHHH IFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEE WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNE EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH GVKTIGGIILQFPFYAGIMAIMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAP HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLVQPFWILPALALSKLKLKDI CCCCEEEEECCEEEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH MGYTVVSMLLVGAIYAVTMLVWPDL HHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKITAFFTELMRRYLPDPFVFAILLTLLTMALAFGVESRPIDAVVQDWGKGFWSLLAFT CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH TQMAVILVMGYVLAAAPIVDRFLDRIAARVSTPRQAIIVATLVGGVGSYLNWGFGLVIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IMARKLALKVKGVHYPLIIAAAYTGFTMYSLGFSATIPVLISTKGHAFEGTMGLIPLTQT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEECCCCCCCCCCCHHHHHHH IFSAPILLTSLAVLVALPLLNAAMHPRQGEKVVELDPATVAEARPAASAEGLLGDEKTLA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEE WRLNNSRMLSLLIGLCGMAYVVMHFVRGGNLDLNMINFFILFLGVLLLGTPMKYVEKVNE EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH GVKTIGGIILQFPFYAGIMAIMHGSGLVESIAHVFVNISTAATLPLWGLVSSFVINFFAP HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGGGHWVLQGPFMINAATTLGASQAQTAMSVMLGNGWNDLVQPFWILPALALSKLKLKDI CCCCEEEEECCEEEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH MGYTVVSMLLVGAIYAVTMLVWPDL HHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]