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The map label for this gene is yodB [H]

Identifier: 120612560

GI number: 120612560

Start: 4344688

End: 4345224

Strand: Direct

Name: yodB [H]

Synonym: Aave_3921

Alternate gene names: 120612560

Gene position: 4344688-4345224 (Clockwise)

Preceding gene: 120612559

Following gene: 120612567

Centisome position: 81.17

GC content: 70.76

Gene sequence:

>537_bases
ATGACGCCAGCCCGGAAGTATTCAGCGACCCTGCGCATCCTGCACTGGGTGATGTTCGTGCTCGTCGCGCTCGCCTACGC
CACGATCAATCTGCGGCAGGCGTTCGAACGCGGCAGCGATGCGCGGCTGCTGATGGTGGAGTCGCATTTCCTGCTCGGCA
TGCTGGTGCTGCTGCTCGTGGCGCCGCGGCTGGTCGCGCGCTGGCGATCGCCGCAGCCGCCGATCGCGCCACCGCTGCCG
GCGCTGCTGCGCATCGGCGCGCACCTGGGGCATGCGCTGCTCTATGCGTTTCTCGTGGCGCAGCCGCTGCTGGGCATGGC
CTGCCGCCTCGTGGGTGGCCGCGGCATCGGCCTGCCGTTCACGTCCGCCGCCATCCCCTGGCCCGCCGCCTGGGTCGACA
AGGAACTCTCCCGCACCCTGGAGGCCGCGCACGAATGGCTCGGCACCGCCTTCTACTGGGTGATCGGCCTGCACATCGCC
GCCGCGCTCTGGCACGCCTTGGTGCGCCGCGACAACGCACTGCGGCGGATGGGGTGA

Upstream 100 bases:

>100_bases
AGCACGCCGGCGCCGTGCGGCCGTTCCGGCGGATTCCACGCCGTGGCACACTGTGCCACCCGCGGGACCGGCCTGCGGGA
ACGCCCTGGAGAGGCCCCCG

Downstream 100 bases:

>100_bases
TCCGGACTATTCGTCCTCGCTGCTTTCCAGCATCTTGCGCAGCAGGAAATCCAGCGCCAGCCGTTCCGCGGGATTGAGCT
TGCCATAGGTGCTCTGGGTG

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTPARKYSATLRILHWVMFVLVALAYATINLRQAFERGSDARLLMVESHFLLGMLVLLLVAPRLVARWRSPQPPIAPPLP
ALLRIGAHLGHALLYAFLVAQPLLGMACRLVGGRGIGLPFTSAAIPWPAAWVDKELSRTLEAAHEWLGTAFYWVIGLHIA
AALWHALVRRDNALRRMG

Sequences:

>Translated_178_residues
MTPARKYSATLRILHWVMFVLVALAYATINLRQAFERGSDARLLMVESHFLLGMLVLLLVAPRLVARWRSPQPPIAPPLP
ALLRIGAHLGHALLYAFLVAQPLLGMACRLVGGRGIGLPFTSAAIPWPAAWVDKELSRTLEAAHEWLGTAFYWVIGLHIA
AALWHALVRRDNALRRMG
>Mature_177_residues
TPARKYSATLRILHWVMFVLVALAYATINLRQAFERGSDARLLMVESHFLLGMLVLLLVAPRLVARWRSPQPPIAPPLPA
LLRIGAHLGHALLYAFLVAQPLLGMACRLVGGRGIGLPFTSAAIPWPAAWVDKELSRTLEAAHEWLGTAFYWVIGLHIAA
ALWHALVRRDNALRRMG

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=34.0909090909091, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19752; Mature: 19621

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPARKYSATLRILHWVMFVLVALAYATINLRQAFERGSDARLLMVESHFLLGMLVLLLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
APRLVARWRSPQPPIAPPLPALLRIGAHLGHALLYAFLVAQPLLGMACRLVGGRGIGLPF
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TSAAIPWPAAWVDKELSRTLEAAHEWLGTAFYWVIGLHIAAALWHALVRRDNALRRMG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPARKYSATLRILHWVMFVLVALAYATINLRQAFERGSDARLLMVESHFLLGMLVLLLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
APRLVARWRSPQPPIAPPLPALLRIGAHLGHALLYAFLVAQPLLGMACRLVGGRGIGLPF
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TSAAIPWPAAWVDKELSRTLEAAHEWLGTAFYWVIGLHIAAALWHALVRRDNALRRMG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]