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The map label for this gene is 120612537

Identifier: 120612537

GI number: 120612537

Start: 4321897

End: 4322520

Strand: Reverse

Name: 120612537

Synonym: Aave_3898

Alternate gene names: NA

Gene position: 4322520-4321897 (Counterclockwise)

Preceding gene: 120612538

Following gene: 120612531

Centisome position: 80.75

GC content: 68.59

Gene sequence:

>624_bases
ATGCCCATGCACAAACGCACTCTCCTTCGCAGCGCAGCGGCCTGCGCCCTGTTCGCCGGCGCGGCGGGCCTGCTCGGGGG
CTGCTCCCAGGAAAAGGCCCCGTCCTTCCAGGGCGTGGACATCACCGGCGCGGAGTACGCGCGCGACCTGCCGCTGCCCG
ACCACAACGGCCAGCCGCGCCATTTGAAGGACTTCGCCGGCAAGGTGGTGGTCGTCTTCTTCGGCTATACCCAGTGCCCG
GACGTCTGCCCGACCTCCATGGCCGAGCTGGCCGAGGTCAAGCGCTCGCTGGGCGCGGACGGCGACCGGCTGCAGGGCCT
GTTCGTCACGGTGGACCCGGAGCGCGACACGCCCGAGGTGCTCAAGGCCTACATGACCAATTTCGATCCGGGCTTCCTCG
CGCTGCGCGGCACGCCCGAGCAGCTCGCGGCCGTCGCCAAGGACTTCAAGATCTACTACAAGAAGGTGCCCGGAAAGACG
CCGACCAGCTACACCATGGACCACTCTGCAGGCAGCTACATCTACGATCCGGCCGGCCGGCTGCGCGTCTATCACCGCTA
CGGCAGCGGTGCTCAGGCCCTGGCGTCCGACGTCAAGGCCTTGCTGCAGGCGCCTGGCGCCTGA

Upstream 100 bases:

>100_bases
TTCCGACGCGCTCGCGCGCAAGACCTTCCGCTTCTCCCTCATCCACCTGAGCCTGCTTTTCGCGGCGCTGCTGGTGGACC
ATTACGTGCTCTGAACCGCC

Downstream 100 bases:

>100_bases
GCGCGGAGGACGGCTCGCGCCCTGTGCCGTGGCGCGGGGCCGAGGCCATGGGCGCGGCGCCCGTGCGGCGCGTGGAAGCG
TCACGCCCCCAGTGCCTGCA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCP
DVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKT
PTSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA

Sequences:

>Translated_207_residues
MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCP
DVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKT
PTSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA
>Mature_206_residues
PMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPRHLKDFAGKVVVVFFGYTQCPD
VCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEVLKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTP
TSYTMDHSAGSYIYDPAGRLRVYHRYGSGAQALASDVKALLQAPGA

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26,
Organism=Homo sapiens, GI281182722, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26,
Organism=Homo sapiens, GI281182716, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26,
Organism=Homo sapiens, GI153791313, Length=153, Percent_Identity=35.2941176470588, Blast_Score=114, Evalue=5e-26,
Organism=Homo sapiens, GI4759068, Length=154, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=155, Percent_Identity=29.0322580645161, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319498, Length=132, Percent_Identity=37.1212121212121, Blast_Score=105, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=132, Percent_Identity=36.3636363636364, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19920710, Length=191, Percent_Identity=33.5078534031414, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22244; Mature: 22112

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
HLKDFAGKVVVVFFGYTQCPDVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEV
HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH
LKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTPTSYTMDHSAGSYIYDPAGR
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCC
LRVYHRYGSGAQALASDVKALLQAPGA
EEEEEECCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PMHKRTLLRSAAACALFAGAAGLLGGCSQEKAPSFQGVDITGAEYARDLPLPDHNGQPR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
HLKDFAGKVVVVFFGYTQCPDVCPTSMAELAEVKRSLGADGDRLQGLFVTVDPERDTPEV
HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH
LKAYMTNFDPGFLALRGTPEQLAAVAKDFKIYYKKVPGKTPTSYTMDHSAGSYIYDPAGR
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCC
LRVYHRYGSGAQALASDVKALLQAPGA
EEEEEECCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA