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The map label for this gene is ygcF [H]

Identifier: 120612485

GI number: 120612485

Start: 4272188

End: 4272826

Strand: Direct

Name: ygcF [H]

Synonym: Aave_3844

Alternate gene names: 120612485

Gene position: 4272188-4272826 (Clockwise)

Preceding gene: 120612484

Following gene: 120612486

Centisome position: 79.81

GC content: 70.74

Gene sequence:

>639_bases
ATGACCTACAGCGTCAAGGAAATCTTCTACACCCTGCAGGGCGAAGGCGGCCAGGCCGGCATGCCCGCCGTGTTCTGCCG
CTTCGCCGGCTGCAACCTCTGGAGCGGCCGCGAAGAAGACAGGAGCAGCGCCGTCTGCCGCTTCTGCGATACCGATTTCG
TCGGCACCGATGGCACGCTGGGCGGCAAGTACGCGCAGGCCGAGGCGCTCGCCGACGTGATCGCCGCGCAATGGCCGGCG
CACGACGCCGATCACCGGCTGGTGGTGCTGACCGGCGGCGAGCCGCTGCTGCAGCTCGACACCCCGCTCATCGACGCGCT
GCACGCCCGGGGCATGCGCATCGCGGTGGAAAGCAACGGCACCGTCGCCGCCCCGCCCGGCATCGACTGGCTCTGCGTGA
GCCCCAAGGCGGGCGCGCCCTGGGTGCAGCGCGCCGGCCAGGAACTCAAGCTGGTCTGGCCGCAGCCCGGCTTCGACCTC
GCGGAACTCGAAAGCGCGACCCGCTTCGAACACCGCTTCCTGCAGCCCATGGACGGGCCCGACCAGGCCGCGAACACCGG
CCTGTGCATCGCCGCCTGCATGGAGCGGCCCGCCTGGCGCCTGAGCCTGCAGACCCACAAACTCACGGGCATCCGCTGA

Upstream 100 bases:

>100_bases
TCTCGGCGGCCCACACCGAGGCGGACGTGGCCCGGCTCGTGGATGCGCTGGCCGACATCGCCCCCACCGCCCGATCCGCA
CTGCCCCAGGAGGCCGCCGC

Downstream 100 bases:

>100_bases
AGCGGCGCCCCGTTTTTCCGCTTTCGTCTCCCGACCATGCTGTTCACCGTCCACCAACGCTTCTTCTTCGATGCCGCGCA
CACGCTGCAGCGCGAAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTLGGKYAQAEALADVIAAQWPA
HDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDL
AELESATRFEHRFLQPMDGPDQAANTGLCIAACMERPAWRLSLQTHKLTGIR

Sequences:

>Translated_212_residues
MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTLGGKYAQAEALADVIAAQWPA
HDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDL
AELESATRFEHRFLQPMDGPDQAANTGLCIAACMERPAWRLSLQTHKLTGIR
>Mature_211_residues
TYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTLGGKYAQAEALADVIAAQWPAH
DADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNGTVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLA
ELESATRFEHRFLQPMDGPDQAANTGLCIAACMERPAWRLSLQTHKLTGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=235, Percent_Identity=33.6170212765957, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 22982; Mature: 22851

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTL
CCEEHEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCCCCCCC
GGKYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECCHHHHHHHCCCEEEEEECCC
TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGP
CEECCCCCCEEEECCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
DQAANTGLCIAACMERPAWRLSLQTHKLTGIR
CCCCCCCEEHHHHHCCCCEEEEEEEEECCCCC
>Mature Secondary Structure 
TYSVKEIFYTLQGEGGQAGMPAVFCRFAGCNLWSGREEDRSSAVCRFCDTDFVGTDGTL
CEEHEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHEEECCCCCCCCCCCC
GGKYAQAEALADVIAAQWPAHDADHRLVVLTGGEPLLQLDTPLIDALHARGMRIAVESNG
CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEECCHHHHHHHCCCEEEEEECCC
TVAAPPGIDWLCVSPKAGAPWVQRAGQELKLVWPQPGFDLAELESATRFEHRFLQPMDGP
CEECCCCCCEEEECCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
DQAANTGLCIAACMERPAWRLSLQTHKLTGIR
CCCCCCCEEHHHHHCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]