Click here to switch to the map view.

The map label for this gene is rhsD [H]

Identifier: 120612437

GI number: 120612437

Start: 4218491

End: 4219759

Strand: Direct

Name: rhsD [H]

Synonym: Aave_3796

Alternate gene names: 120612437

Gene position: 4218491-4219759 (Clockwise)

Preceding gene: 120612436

Following gene: 120612438

Centisome position: 78.81

GC content: 69.9

Gene sequence:

>1269_bases
ATGATGCGCACATGGGTAAGCACCACGCCAATACCTCTGCCGCACGTGAGCCGCACGCCCTTCGACGCCAACGGCCACCC
CGAGGCAGCGGTGGACGCCCTGGGCCGGGAGACGCGCACCGTGTTCGACCGCCGCGGCAACCTGACGCTGCACCTGGATG
CCGCCGGGCACGCGACCCGCATCGAATACGGCACCGAAGGCGGCGCCCGGGACCGCCCCGTGCGCGTCACCGATGCCCTG
GGCCACACGTGGACCCATGAATACGATGCGCGCGGCAACCGCATCCGCTCCACCGATCCACTGGGCCGCAGCACCACCAC
CCAGTACGACGCCCGGGGCCTGCCGGTCGCCCTCACCGATGCCGCCGGCCGCACCCGCCGGCTGCAGTGGGACGCCTCCG
CCCAGCTCATCGCCTATACCGACTGCTCGGGCCGCACCAGCCGCTACGCCTACGACGCCCTGGGCCACCTGGCCGAGAGC
GCCGATGCCTTGGGCCACACCACCCGCTACCGCCACGACGCGCAGGGCCGCCTGCGCGAAGTGATCGAACCCACGGGCGC
CACCCACCGCTACGAATGGGACGGCGAAGGCCAGTTGCTCGCCTACACCGACCCGCTCGGCGGCACCACGCGCTACCGCT
ACCACGGCTCGGGCCAGCCGTCCGAGCGCACCGACGCGCGCGGCGGCGTGCTGCGCTACCACTACGACCTGGGCGAACGG
CTCGTCGCACTGACCAACGAGAACGGCGCGCACACCCGGTTCACCTACGATGCGGCCGACCACCTCACCGACGAGATCGG
CTTCGATGGCCGCCACCAGCGCTACGTGTACAACGCCGCGGGCGAACTGACCCACGTCGTCGAGGCCGGAGGCAGCGACG
CCGGCCCGGGCAAGGTCACGCACCTGGAGCGCGATGCGCTGGGCCGGTTCCCCCCGCGTCAGAATAGTTGTCGCCTCGAT
AGGACTCCGGTGTTCGGAGTTCATGAAGGTAGTAGGAGGCTGTGTAGTTGTGGTCGAAGGTCTGCGTGGTGGGCAACGCG
AAGCGTTGTCCACGGCAAGCGGGCCGGTGCGCGCAGCGCATCGTCCACAAATGCACAGCCTTGCAGGTGCCTTCAGGCGC
CGGCCCGCTGCCGTGTGTTTCACCCCGGGGGCGAAGAGCGAGAAGCCAGTTGGCACGATACGGACAAGCATTCAAAGACA
GAGCGGTGGGCAGGTTGCTGCCACCGCACAGCGCCACGCCCGACGAGCTGGCGCGTGAGATCGGCGTGA

Upstream 100 bases:

>100_bases
CAAAAACCAATTTCAAATATATTCAAAGACTAAATTAATACGGCGGTTCAAGTATGAAGTGCGACACCTCAACTGGCTTC
GCTATGTGCTCCACAGAGTG

Downstream 100 bases:

>100_bases
GTGCCAGCACGCTGGAGCGTTGGCGTGCAGATGCGCTGGCCCAGCCCGCGCGCGAGCGCCACTGGACGGCCGCGGCACGG
CTGGACGCGGTGCTGACGAC

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MMRTWVSTTPIPLPHVSRTPFDANGHPEAAVDALGRETRTVFDRRGNLTLHLDAAGHATRIEYGTEGGARDRPVRVTDAL
GHTWTHEYDARGNRIRSTDPLGRSTTTQYDARGLPVALTDAAGRTRRLQWDASAQLIAYTDCSGRTSRYAYDALGHLAES
ADALGHTTRYRHDAQGRLREVIEPTGATHRYEWDGEGQLLAYTDPLGGTTRYRYHGSGQPSERTDARGGVLRYHYDLGER
LVALTNENGAHTRFTYDAADHLTDEIGFDGRHQRYVYNAAGELTHVVEAGGSDAGPGKVTHLERDALGRFPPRQNSCRLD
RTPVFGVHEGSRRLCSCGRRSAWWATRSVVHGKRAGARSASSTNAQPCRCLQAPARCRVFHPGGEEREASWHDTDKHSKT
ERWAGCCHRTAPRPTSWRVRSA

Sequences:

>Translated_422_residues
MMRTWVSTTPIPLPHVSRTPFDANGHPEAAVDALGRETRTVFDRRGNLTLHLDAAGHATRIEYGTEGGARDRPVRVTDAL
GHTWTHEYDARGNRIRSTDPLGRSTTTQYDARGLPVALTDAAGRTRRLQWDASAQLIAYTDCSGRTSRYAYDALGHLAES
ADALGHTTRYRHDAQGRLREVIEPTGATHRYEWDGEGQLLAYTDPLGGTTRYRYHGSGQPSERTDARGGVLRYHYDLGER
LVALTNENGAHTRFTYDAADHLTDEIGFDGRHQRYVYNAAGELTHVVEAGGSDAGPGKVTHLERDALGRFPPRQNSCRLD
RTPVFGVHEGSRRLCSCGRRSAWWATRSVVHGKRAGARSASSTNAQPCRCLQAPARCRVFHPGGEEREASWHDTDKHSKT
ERWAGCCHRTAPRPTSWRVRSA
>Mature_422_residues
MMRTWVSTTPIPLPHVSRTPFDANGHPEAAVDALGRETRTVFDRRGNLTLHLDAAGHATRIEYGTEGGARDRPVRVTDAL
GHTWTHEYDARGNRIRSTDPLGRSTTTQYDARGLPVALTDAAGRTRRLQWDASAQLIAYTDCSGRTSRYAYDALGHLAES
ADALGHTTRYRHDAQGRLREVIEPTGATHRYEWDGEGQLLAYTDPLGGTTRYRYHGSGQPSERTDARGGVLRYHYDLGER
LVALTNENGAHTRFTYDAADHLTDEIGFDGRHQRYVYNAAGELTHVVEAGGSDAGPGKVTHLERDALGRFPPRQNSCRLD
RTPVFGVHEGSRRLCSCGRRSAWWATRSVVHGKRAGARSASSTNAQPCRCLQAPARCRVFHPGGEEREASWHDTDKHSKT
ERWAGCCHRTAPRPTSWRVRSA

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=279, Percent_Identity=36.2007168458781, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1790020, Length=299, Percent_Identity=33.1103678929766, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI48994942, Length=299, Percent_Identity=33.1103678929766, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1786917, Length=299, Percent_Identity=32.7759197324415, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 46868; Mature: 46868

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTWVSTTPIPLPHVSRTPFDANGHPEAAVDALGRETRTVFDRRGNLTLHLDAAGHATR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCEEEEEECCCCEEE
IEYGTEGGARDRPVRVTDALGHTWTHEYDARGNRIRSTDPLGRSTTTQYDARGLPVALTD
EEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEC
AAGRTRRLQWDASAQLIAYTDCSGRTSRYAYDALGHLAESADALGHTTRYRHDAQGRLRE
CCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
VIEPTGATHRYEWDGEGQLLAYTDPLGGTTRYRYHGSGQPSERTDARGGVLRYHYDLGER
HHCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCE
LVALTNENGAHTRFTYDAADHLTDEIGFDGRHQRYVYNAAGELTHVVEAGGSDAGPGKVT
EEEEECCCCCEEEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEE
HLERDALGRFPPRQNSCRLDRTPVFGVHEGSRRLCSCGRRSAWWATRSVVHGKRAGARSA
EECHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
SSTNAQPCRCLQAPARCRVFHPGGEEREASWHDTDKHSKTERWAGCCHRTAPRPTSWRVR
CCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
SA
CC
>Mature Secondary Structure
MMRTWVSTTPIPLPHVSRTPFDANGHPEAAVDALGRETRTVFDRRGNLTLHLDAAGHATR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCEEEEEECCCCEEE
IEYGTEGGARDRPVRVTDALGHTWTHEYDARGNRIRSTDPLGRSTTTQYDARGLPVALTD
EEECCCCCCCCCCEEEEHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEC
AAGRTRRLQWDASAQLIAYTDCSGRTSRYAYDALGHLAESADALGHTTRYRHDAQGRLRE
CCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
VIEPTGATHRYEWDGEGQLLAYTDPLGGTTRYRYHGSGQPSERTDARGGVLRYHYDLGER
HHCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCE
LVALTNENGAHTRFTYDAADHLTDEIGFDGRHQRYVYNAAGELTHVVEAGGSDAGPGKVT
EEEEECCCCCEEEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEE
HLERDALGRFPPRQNSCRLDRTPVFGVHEGSRRLCSCGRRSAWWATRSVVHGKRAGARSA
EECHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
SSTNAQPCRCLQAPARCRVFHPGGEEREASWHDTDKHSKTERWAGCCHRTAPRPTSWRVR
CCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
SA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]