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The map label for this gene is ywhC [H]

Identifier: 120612353

GI number: 120612353

Start: 4087653

End: 4088321

Strand: Direct

Name: ywhC [H]

Synonym: Aave_3710

Alternate gene names: 120612353

Gene position: 4087653-4088321 (Clockwise)

Preceding gene: 120612352

Following gene: 120612354

Centisome position: 76.37

GC content: 66.67

Gene sequence:

>669_bases
GTGGACTTCTCCAATCTCATCCAAACCATCCTCATCTACGCCCTGCCGGTGCTCTTCGCGATCACCGTGCACGAGGCGGC
GCACGGCTACGCCGCGCGTCACTTCGGCGACAACACCGCGTTGATGATGGGGCGCATCACGCTCAATCCGCTCAAGCACA
TCGATCCGGTGGGCACGATCCTGATGCCGCTGCTGCTGTATTTCGCGACGTCGGGCACCTTCCTGTTCGGCTACGCCAAG
CCGGTGCCGGTGAATTTCGGGCACCTGCGCAACCCCAAGCGGGACATGATCTGGGTCGCGCTCGCGGGGCCGGCCTCCAA
CTTCGTGCAGGCGGTGCTGTGGGCCGTGCTGCTGGTGATGCTGGTGGGCTTCGGGGTGGACGAGCGCTTCTTCATGGAGA
TGGCGCGCGCCGGCGTGCTGGTGAACCTCGTCATGTGGGCGTTCAACCTGTTCCCCCTGCCGCCGCTGGACGGCGGGCGC
ATCCTGGTGGGGCTGCTGCCCTGGCGGCAGGCCAGCTGGCTCTCGCGCATCGAGCCCTACGGCTTCTTCATCGTGCTGGC
GCTGGTGGTGGCGGGTATCGTGGGCACGGTGTGGCTGCGGCCGCTGATGTCCCTGGGCTATTCGGCCATCAACCTGCTGC
TCACGCCGCTCACGGCCCTGCTGGGCTGA

Upstream 100 bases:

>100_bases
GCAACAAATGAACATCGTAGCGCCCCCGTGGCCTGTCCGGTCCGAGGGGTTCCCCTGCCGCGTGCCGGGTGCGCAACGCG
GCCTCTGAGACAATCGGCCG

Downstream 100 bases:

>100_bases
GCCGGCGCGGCGCCCGCGGGCCGTGCGGCGGCCCGCCCTTCTTTCCGTTTCCGTTTTCCGTTTCCTCCGGCCCCGAGCCG
CTTCGACCATGAGCACCACG

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDFSNLIQTILIYALPVLFAITVHEAAHGYAARHFGDNTALMMGRITLNPLKHIDPVGTILMPLLLYFATSGTFLFGYAK
PVPVNFGHLRNPKRDMIWVALAGPASNFVQAVLWAVLLVMLVGFGVDERFFMEMARAGVLVNLVMWAFNLFPLPPLDGGR
ILVGLLPWRQASWLSRIEPYGFFIVLALVVAGIVGTVWLRPLMSLGYSAINLLLTPLTALLG

Sequences:

>Translated_222_residues
MDFSNLIQTILIYALPVLFAITVHEAAHGYAARHFGDNTALMMGRITLNPLKHIDPVGTILMPLLLYFATSGTFLFGYAK
PVPVNFGHLRNPKRDMIWVALAGPASNFVQAVLWAVLLVMLVGFGVDERFFMEMARAGVLVNLVMWAFNLFPLPPLDGGR
ILVGLLPWRQASWLSRIEPYGFFIVLALVVAGIVGTVWLRPLMSLGYSAINLLLTPLTALLG
>Mature_222_residues
MDFSNLIQTILIYALPVLFAITVHEAAHGYAARHFGDNTALMMGRITLNPLKHIDPVGTILMPLLLYFATSGTFLFGYAK
PVPVNFGHLRNPKRDMIWVALAGPASNFVQAVLWAVLLVMLVGFGVDERFFMEMARAGVLVNLVMWAFNLFPLPPLDGGR
ILVGLLPWRQASWLSRIEPYGFFIVLALVVAGIVGTVWLRPLMSLGYSAINLLLTPLTALLG

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24463; Mature: 24463

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSNLIQTILIYALPVLFAITVHEAAHGYAARHFGDNTALMMGRITLNPLKHIDPVGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEECCHHHHCCHHHHH
LMPLLLYFATSGTFLFGYAKPVPVNFGHLRNPKRDMIWVALAGPASNFVQAVLWAVLLVM
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
LVGFGVDERFFMEMARAGVLVNLVMWAFNLFPLPPLDGGRILVGLLPWRQASWLSRIEPY
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCHH
GFFIVLALVVAGIVGTVWLRPLMSLGYSAINLLLTPLTALLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDFSNLIQTILIYALPVLFAITVHEAAHGYAARHFGDNTALMMGRITLNPLKHIDPVGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEECCHHHHCCHHHHH
LMPLLLYFATSGTFLFGYAKPVPVNFGHLRNPKRDMIWVALAGPASNFVQAVLWAVLLVM
HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
LVGFGVDERFFMEMARAGVLVNLVMWAFNLFPLPPLDGGRILVGLLPWRQASWLSRIEPY
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHCCHH
GFFIVLALVVAGIVGTVWLRPLMSLGYSAINLLLTPLTALLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]