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The map label for this gene is yciO [H]

Identifier: 120612352

GI number: 120612352

Start: 4085639

End: 4086274

Strand: Direct

Name: yciO [H]

Synonym: Aave_3708

Alternate gene names: 120612352

Gene position: 4085639-4086274 (Clockwise)

Preceding gene: 120612351

Following gene: 120612353

Centisome position: 76.33

GC content: 71.54

Gene sequence:

>636_bases
ATGGCCCAGTATTTCGAAGTCCACCCCGACAACCCGCAGCCCCGGCTGCTCAAGCAGGCCGCGGCCCTGCTGGCCCGCGG
CGCCGTGCTCGCGGTGCCCACCGATTCCAGCTACGCGCTCGTGTGCCAGCTCGACGACAAGGACGCCGTGGACCGGCTGC
GCCGCATCCGGCAGGTGGACGAGAAGCACCACCTGACGCTGCTGTGCCGCGACCTGTCGGAAGTGTCGAACTACGCCCGC
GTGGACAACCGCCAATACCGCCTCGTGAAGCAGGCCACGCCCGGCCCCTACACCTTCATCCTGGACGCGACCAAGGAAGT
GCCGCGCCGCGTGAGCCACCCGCAGCGCAAGACCATCGGCCTGCGCGTGCCCGACCGCAAGGGGCTGCAGCTGCTGCTGG
AGCTGCACGGCGCGCCCCTGCTGGCGACCACGCTGATCCCGCCGGGCGAGACGGAGCCCATGAACGATCCGTCGGAGATC
CGCGCACGCTTCGAGCACCAGATCGATGCCGTGGTGGACGCGGGCGCCTGCCCGCTGGAGCCCACCACCGTGGTGGACCT
GACCGACATGGCCACGGGCGGCGATCCGCGCGTGGTGCGCGAGGGCCGCGGCCCGCTGTCGGCGCTGGGGCTGTAG

Upstream 100 bases:

>100_bases
CGCACACCGACCTGGGCACGCTGCCGCCCCTGCCCGGCGCCCTCACGCCCGTGTGGGAGCTGCTGGCCGACCGCGTGCGG
CGCGCCCACTGACACCCCCC

Downstream 100 bases:

>100_bases
AGACCGGCTCAGTCCAGCTTGAACGCACCCACCGCGCGCTGAAGGTCCTGAGCGCGATCGTTGAGCGCGGAAGCCGCGCG
CGAGGCCTGCTGCACCAGCG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAQYFEVHPDNPQPRLLKQAAALLARGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYAR
VDNRQYRLVKQATPGPYTFILDATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATTLIPPGETEPMNDPSEI
RARFEHQIDAVVDAGACPLEPTTVVDLTDMATGGDPRVVREGRGPLSALGL

Sequences:

>Translated_211_residues
MAQYFEVHPDNPQPRLLKQAAALLARGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYAR
VDNRQYRLVKQATPGPYTFILDATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATTLIPPGETEPMNDPSEI
RARFEHQIDAVVDAGACPLEPTTVVDLTDMATGGDPRVVREGRGPLSALGL
>Mature_210_residues
AQYFEVHPDNPQPRLLKQAAALLARGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARV
DNRQYRLVKQATPGPYTFILDATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATTLIPPGETEPMNDPSEIR
ARFEHQIDAVVDAGACPLEPTTVVDLTDMATGGDPRVVREGRGPLSALGL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=204, Percent_Identity=51.9607843137255, Blast_Score=219, Evalue=1e-58,
Organism=Drosophila melanogaster, GI78707274, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23347; Mature: 23216

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYFEVHPDNPQPRLLKQAAALLARGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVD
CCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
EKHHLTLLCRDLSEVSNYARVDNRQYRLVKQATPGPYTFILDATKEVPRRVSHPQRKTIG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCCHHEEE
LRVPDRKGLQLLLELHGAPLLATTLIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPLE
EECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVVDLTDMATGGDPRVVREGRGPLSALGL
CCEEEEEHHCCCCCCCCEEECCCCCHHHCCC
>Mature Secondary Structure 
AQYFEVHPDNPQPRLLKQAAALLARGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVD
CCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
EKHHLTLLCRDLSEVSNYARVDNRQYRLVKQATPGPYTFILDATKEVPRRVSHPQRKTIG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHCCCCHHEEE
LRVPDRKGLQLLLELHGAPLLATTLIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPLE
EECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVVDLTDMATGGDPRVVREGRGPLSALGL
CCEEEEEHHCCCCCCCCEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]