Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 120612339

GI number: 120612339

Start: 4072007

End: 4073425

Strand: Reverse

Name: petB [H]

Synonym: Aave_3695

Alternate gene names: 120612339

Gene position: 4073425-4072007 (Counterclockwise)

Preceding gene: 120612340

Following gene: 120612338

Centisome position: 76.1

GC content: 64.83

Gene sequence:

>1419_bases
ATGGCTTACCGCGAATTCAAGGACATCTCCCCCAACGCCTCCACGGGCGCCAAGGTCACGAACTGGCTCGAGAACCGCTT
CCCCACGGCCTTCGACGCCTACCGCGTCCACATGTCGGAGTACTACGCTCCGAAGAACTTCAACTTCTGGTACATCTTCG
GCTCGCTCGCGCTGCTGGTGCTGGTGATCCAGATCGTCACCGGCATCTTCCTCGTGATGCACTACAAGCCCGATGCCGCC
AAGGCCTTCGAGTCGGTCGAGTACATCATGCGCGACGTGCCCTGGGGCTGGCTGATCCGCTACATGCACTCCACGGGCGC
CTCGGCGTTCTTCGTCGTGGTGTACCTGCACATGTTCCGCGGGCTGCTCTACGGCTCCTACCGCAAGCCGCGCGAGCTGG
TCTGGATCTTCGGCTGCGCGATCTTCCTCGCGCTCATGGCCGAAGCCTTCATGGGCTACCTGCTGCCCTGGGGCCAGATG
TCCTACTGGGGCGCCCAGGTGATCGTGAACCTGTTCGCGGCCATTCCCTTCGTCGGCCCCGATCTCGCGCTGCTCATCCG
TGGCGACTACGTGGTGGGCGACGCCACGCTCAACCGCTTCTTCAGCTTCCACGTGATCGCCGTGCCGCTCGTGCTGCTCG
GCCTGGTGGTCGCCCACCTGCTGGCGCTGCACGACGTGGGCTCCAACAACCCCGACGGCATCGAGATCAAGGGCCCGAAC
GCCCCGAAGGACGAGCACGGCCATCCGCTGGACGGCATTCCGTTCCACCCGTACTACACCGTGCACGACATCTTCGGCGT
CTGCGTGTTCCTGTTCATCTTCTCGGCGGTGGTGTTCTTCGCCCCCGAGTTCGGCGGCTACTTCCTGGAGTACAACAACT
TCATCCCGGCCGATCCGCTCAAGACTCCCGCGCACATCGCGCCCGTCTGGTACTTCACGCCGTTCTACTCGATGCTGCGC
GCCATCACCAGCGAGATGATGTATGCCCTCATCGCCTGCGTCGTGCTGGCGGCAGGCTTCGGCATCGTCAAGGGGCGGCT
GCCGGGCTTCGTCAAGGCCGCCATCGCGGTCGTGGCCGTGGCCGCCGTCGCGCTCATGCTGTCCATCGACGCCAAGTTCT
GGGGCGTGGTGGTGATGGGCGGCGCCGTCATCATCCTCTTCTTCCTGCCCTGGCTCGATCACAGCCCGGCCCGTTCCATC
CGCTACCGCCCCGGCTGGCACAAGTACCTCTACGGCATCTTCGTGGTCAATTTCGTGGTGCTGGCCTACCTGGGCGTGCA
GCCGCCGTCCCCGATCGGCGAGCGCGTCTCGCAGGTGGGAACGCTGTTTTACTTCGGCTTCTTCCTGCTCATGCCGTGGT
GGAGCCGACTGGGCGAGCCCAAGCCGGTGCCCGACCGCGTGACCTTCGCCGCGCACTGA

Upstream 100 bases:

>100_bases
ACAAGCCCGCGCCCGACAACCTCGAGGTGCCTCCCCACATGTACCTGTCGGAGACCAGGCTCCTGATCGGTGAAGACAAG
AAGGCCTGAGGGAGACGCAC

Downstream 100 bases:

>100_bases
AGCGGGCCGGAACGACGACCATGAAAAAAATCATCCTCACGCTGATCGCCTCGCTCGGCTTCGTCCTGGGCGCGCACGCC
GCGGAAGGCGGCATCGCCTG

Product: cytochrome b/b6 domain-containing protein

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MAYREFKDISPNASTGAKVTNWLENRFPTAFDAYRVHMSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAA
KAFESVEYIMRDVPWGWLIRYMHSTGASAFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLALMAEAFMGYLLPWGQM
SYWGAQVIVNLFAAIPFVGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVVAHLLALHDVGSNNPDGIEIKGPN
APKDEHGHPLDGIPFHPYYTVHDIFGVCVFLFIFSAVVFFAPEFGGYFLEYNNFIPADPLKTPAHIAPVWYFTPFYSMLR
AITSEMMYALIACVVLAAGFGIVKGRLPGFVKAAIAVVAVAAVALMLSIDAKFWGVVVMGGAVIILFFLPWLDHSPARSI
RYRPGWHKYLYGIFVVNFVVLAYLGVQPPSPIGERVSQVGTLFYFGFFLLMPWWSRLGEPKPVPDRVTFAAH

Sequences:

>Translated_472_residues
MAYREFKDISPNASTGAKVTNWLENRFPTAFDAYRVHMSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAA
KAFESVEYIMRDVPWGWLIRYMHSTGASAFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLALMAEAFMGYLLPWGQM
SYWGAQVIVNLFAAIPFVGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVVAHLLALHDVGSNNPDGIEIKGPN
APKDEHGHPLDGIPFHPYYTVHDIFGVCVFLFIFSAVVFFAPEFGGYFLEYNNFIPADPLKTPAHIAPVWYFTPFYSMLR
AITSEMMYALIACVVLAAGFGIVKGRLPGFVKAAIAVVAVAAVALMLSIDAKFWGVVVMGGAVIILFFLPWLDHSPARSI
RYRPGWHKYLYGIFVVNFVVLAYLGVQPPSPIGERVSQVGTLFYFGFFLLMPWWSRLGEPKPVPDRVTFAAH
>Mature_471_residues
AYREFKDISPNASTGAKVTNWLENRFPTAFDAYRVHMSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAAK
AFESVEYIMRDVPWGWLIRYMHSTGASAFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLALMAEAFMGYLLPWGQMS
YWGAQVIVNLFAAIPFVGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVVAHLLALHDVGSNNPDGIEIKGPNA
PKDEHGHPLDGIPFHPYYTVHDIFGVCVFLFIFSAVVFFAPEFGGYFLEYNNFIPADPLKTPAHIAPVWYFTPFYSMLRA
ITSEMMYALIACVVLAAGFGIVKGRLPGFVKAAIAVVAVAAVALMLSIDAKFWGVVVMGGAVIILFFLPWLDHSPARSIR
YRPGWHKYLYGIFVVNFVVLAYLGVQPPSPIGERVSQVGTLFYFGFFLLMPWWSRLGEPKPVPDRVTFAAH

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=411, Percent_Identity=39.1727493917275, Blast_Score=252, Evalue=5e-67,
Organism=Saccharomyces cerevisiae, GI6226529, Length=408, Percent_Identity=38.4803921568627, Blast_Score=240, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6226532, Length=244, Percent_Identity=46.7213114754098, Blast_Score=207, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6226531, Length=152, Percent_Identity=53.2894736842105, Blast_Score=154, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6226530, Length=137, Percent_Identity=50.3649635036496, Blast_Score=128, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 53076; Mature: 52945

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AYREFKDISPNASTGAKVTNWLENRFPTAFDAYRVHMSEYYAPKNFNFWYIFGSLALLV
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH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HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA