| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yjeP [H]
Identifier: 120612301
GI number: 120612301
Start: 4031903
End: 4034473
Strand: Direct
Name: yjeP [H]
Synonym: Aave_3656
Alternate gene names: 120612301
Gene position: 4031903-4034473 (Clockwise)
Preceding gene: 120612300
Following gene: 120612303
Centisome position: 75.32
GC content: 72.89
Gene sequence:
>2571_bases ATGGACGCGACCATTCACTCCCTTTCCCTGCTTCGTTTCCTGCGGCGCCTTCCGCGCACGGCGCTGGCGATGATCCTCCT GGCGGCCTGCCTGCTGGCGTGGCCGCCCGGCATGGTGCAAGCAGCACCACAGGTACCCGCCTCGGCCCCGGCCTCCGCCA GCAGCGCGGCGGCATCGCGGGCCGCTGCGGCGGCGGCCGCCGGGAACATCGTCGATCCCGACACGCCGCTGCCCTCCGTG GACGAGCTGCGCAAGCGCCTCGAGGCCATCCCCCGCAAGCTCGGAGACCAGGACGACGGCCGCAAGCTCGTGAACGAGGC CTACGCCGTCGGCGCCACGGCCGAGCAGGTGGTGGCCCGCCGCACGGCCGACCTGGCGGACCTGGACAGCCGCCTCGCCG GACTCGGCCCCGCCCCCGAAAAAGGCGCGCCCGCCGACTCGCCCGACGTCGTCCAGCAGCGCAGCGCCCTCGCCAAGCAG CGCGCCACCGTCGATGCGGACCTCAAGCTCGCGCGCCTGATCGCCGTCGATGCGGAACAGCTCGGCGCCGACCTGCTGCG CCAGCGGCGCCAGCAGTTCCAGGCCGAACTCACCGCACGCGCCGATTCGCCCCTGGGCGCCGCCTTCTGGCGCAACCTGC GCGCCGCATGGCCCACGGACACCGAGCGCCTGTCCGTCCTGGCCATCGAGGCCCGGCAGGCCGCGCAGCGCGCCCTCGAA CCCGAACGGCGCCGGACCTTCCTCGTCAGCCTGCTGGGCGCACTGCTGCTCCTGGTGGTCGGCAACTGGGCCGGCGAGCG CCTGCTCGTGCGCATCGCGCCGGCCAAACTGCCCGCGGGCCGGCTGCGGCGCTCCCTGCTGGCCTCGGCCTCCGTGCTGG CGAACGTGATCTTCACCGGCACCGCCGCGCAATGGCTGCTGAGCGGGCTCGACGCGGGCGACAACCTCGGCGAGCGGCTC GACGGGCTCGGGCACACCGCCGTGGGCCTCGCGGTCTTCGCGGCCTTCGTGATCGGCCTGGGGCACGCCCTGCTCTCGCG CAAGCGCAGCTCCTGGCGCCTGCCCTCGCTGCCCGACGACCTTGCCCGGCGGTTGAGCCCCTACCCCTGGTGGATCGCGA TCATCGCGGCGCTCGGCGGCATGGTGACGGAGATCAACGCCGCCGTGGGCGCCAGCCTCGCCGCGGAAATCACCGCCCAG GCCTGCTTCGCGCTGCTGGTGGCCGCGGTCGTCGCCGCGTCGGTGCGGCAGCTCAACGCGCCGCTGCCCGTGCCGGCGCA GGAGCCGGCCGCCGGCGAAGACGCCGCGCCCGCTCCGGCCGCCCCGCCGGCGCGCCCTCTCTGGGTCGGCCTGCTGGTCG CCTGCGCGGGCATCGCCTCCCTCGCGGTGCTGCTGCTGGTCGCCTTCGGCTACATCGCGCTGGCCGGGGCACTGGCGCGG CAGATGGTCTGGAGCGGTGTCGCCTTCGCCACCGCGTACCTGCTCTACCAACTGGTGGACGACCTCTGCGACGCCATGCT CTCCTCGCGCAGCGGCTTCGGGCGGCGCCTGCACACGGGCATGGGCATCGACCCGGGCCTGCTCGACCAGGCGGCGGTCG TGTTGTCCGGCGCCCTGCGCGTCGTGCTGTTCTTCTACCTGGTCATCGCCCTGCTGGCCCCCTTCGGCACCGGCCCGGAC GAGCTGTTCCGCCGTGGCAGCGCGATGGACCAGGGCCTGAACCTCGGCAACTTCGCGCTGGCCCCGCAGGCCCTGCTGAC GGCCCTGGGCGTCGTCGTGGCGGGCTTCATCGGCATCCGCGTGATCAAGCGCTGGCTCAGCGACCGGTATTTTCCCAGCA CCACGCTGGAGCCGGGCATGCGCAGCTCCATCACCACCCTGCTGGGCTACTTCGGCGGCGTGATGGTGATCGCAGCCGCG CTGGCGGCGCTGGGCATCAGCGTGGAGCGCATCGCCTGGGTCGCGAGCGCGCTGTCGGTGGGTATCGGCTTCGGGCTGCA GGCCATCGTGCAGAACTTCATCTCGGGCCTGATCCTGCTGGCAGAACGGCCCGTGAAGGTGGGAGACTGGGTCAAGCTCG GCGACACCGAAGGCGACATCCGCCGCATCAACGTGCGCGCCACCGAGATCCAGCTGGGCGACCACTCCACCGTGATCGTG CCCAACTCGGAGTTCATCACCAAGACCGTGCGCAACATGACCTGGGGCGGCTCGCAGGGCCGCGTGCTGCTGCGCCTGCC GGCCCCGCTGGACACCGACGCCCAGCGCATGCGCGCCCTGATCCTGGATGCCTTCAAGGCGCACGAAAGCATCCTGGAGA GCCCAGGGCCCAGCGTCACCCTGGAAGACATCGTGAGCGGCACCCTCACCTTCCTGGCCATCGGCTACGTGAGCAACCCG CGCAACGCCGGCGGCGTGAAAAGCGACCTGCTTTTTTCCATCCTCGAATCGCTGCGCGCCGCAGGCCTGGCGCTCTCGCC CCCGGCCACCACCGCCGTGGCGCCGCTGTCCGCCACAGCCGCCCTCCCGCCCAGGGAGCCGGCCGGCACGCCGACGCCGG GCACGGCGTAA
Upstream 100 bases:
>100_bases TGGGCCGCGCAGCGGCTCATCGACCTGGGCACCGACGGGATCATCACCGACCGGGTGGACCTCTTCAGTCCGGCGCGGTG ATACCCTCGCGGGTCCAGCC
Downstream 100 bases:
>100_bases GCCACCGCCGCACGCCCGCCGGCGGCTCCGGTTCAACCCAGTTCAGTCCAGCTTGGCGCCGGACTGCTGCACCGCCACGG CCCAGCGCGGCATCTCCGCC
Product: mechanosensitive ion channel protein MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MDATIHSLSLLRFLRRLPRTALAMILLAACLLAWPPGMVQAAPQVPASAPASASSAAASRAAAAAAAGNIVDPDTPLPSV DELRKRLEAIPRKLGDQDDGRKLVNEAYAVGATAEQVVARRTADLADLDSRLAGLGPAPEKGAPADSPDVVQQRSALAKQ RATVDADLKLARLIAVDAEQLGADLLRQRRQQFQAELTARADSPLGAAFWRNLRAAWPTDTERLSVLAIEARQAAQRALE PERRRTFLVSLLGALLLLVVGNWAGERLLVRIAPAKLPAGRLRRSLLASASVLANVIFTGTAAQWLLSGLDAGDNLGERL DGLGHTAVGLAVFAAFVIGLGHALLSRKRSSWRLPSLPDDLARRLSPYPWWIAIIAALGGMVTEINAAVGASLAAEITAQ ACFALLVAAVVAASVRQLNAPLPVPAQEPAAGEDAAPAPAAPPARPLWVGLLVACAGIASLAVLLLVAFGYIALAGALAR QMVWSGVAFATAYLLYQLVDDLCDAMLSSRSGFGRRLHTGMGIDPGLLDQAAVVLSGALRVVLFFYLVIALLAPFGTGPD ELFRRGSAMDQGLNLGNFALAPQALLTALGVVVAGFIGIRVIKRWLSDRYFPSTTLEPGMRSSITTLLGYFGGVMVIAAA LAALGISVERIAWVASALSVGIGFGLQAIVQNFISGLILLAERPVKVGDWVKLGDTEGDIRRINVRATEIQLGDHSTVIV PNSEFITKTVRNMTWGGSQGRVLLRLPAPLDTDAQRMRALILDAFKAHESILESPGPSVTLEDIVSGTLTFLAIGYVSNP RNAGGVKSDLLFSILESLRAAGLALSPPATTAVAPLSATAALPPREPAGTPTPGTA
Sequences:
>Translated_856_residues MDATIHSLSLLRFLRRLPRTALAMILLAACLLAWPPGMVQAAPQVPASAPASASSAAASRAAAAAAAGNIVDPDTPLPSV DELRKRLEAIPRKLGDQDDGRKLVNEAYAVGATAEQVVARRTADLADLDSRLAGLGPAPEKGAPADSPDVVQQRSALAKQ RATVDADLKLARLIAVDAEQLGADLLRQRRQQFQAELTARADSPLGAAFWRNLRAAWPTDTERLSVLAIEARQAAQRALE PERRRTFLVSLLGALLLLVVGNWAGERLLVRIAPAKLPAGRLRRSLLASASVLANVIFTGTAAQWLLSGLDAGDNLGERL DGLGHTAVGLAVFAAFVIGLGHALLSRKRSSWRLPSLPDDLARRLSPYPWWIAIIAALGGMVTEINAAVGASLAAEITAQ ACFALLVAAVVAASVRQLNAPLPVPAQEPAAGEDAAPAPAAPPARPLWVGLLVACAGIASLAVLLLVAFGYIALAGALAR QMVWSGVAFATAYLLYQLVDDLCDAMLSSRSGFGRRLHTGMGIDPGLLDQAAVVLSGALRVVLFFYLVIALLAPFGTGPD ELFRRGSAMDQGLNLGNFALAPQALLTALGVVVAGFIGIRVIKRWLSDRYFPSTTLEPGMRSSITTLLGYFGGVMVIAAA LAALGISVERIAWVASALSVGIGFGLQAIVQNFISGLILLAERPVKVGDWVKLGDTEGDIRRINVRATEIQLGDHSTVIV PNSEFITKTVRNMTWGGSQGRVLLRLPAPLDTDAQRMRALILDAFKAHESILESPGPSVTLEDIVSGTLTFLAIGYVSNP RNAGGVKSDLLFSILESLRAAGLALSPPATTAVAPLSATAALPPREPAGTPTPGTA >Mature_856_residues MDATIHSLSLLRFLRRLPRTALAMILLAACLLAWPPGMVQAAPQVPASAPASASSAAASRAAAAAAAGNIVDPDTPLPSV DELRKRLEAIPRKLGDQDDGRKLVNEAYAVGATAEQVVARRTADLADLDSRLAGLGPAPEKGAPADSPDVVQQRSALAKQ RATVDADLKLARLIAVDAEQLGADLLRQRRQQFQAELTARADSPLGAAFWRNLRAAWPTDTERLSVLAIEARQAAQRALE PERRRTFLVSLLGALLLLVVGNWAGERLLVRIAPAKLPAGRLRRSLLASASVLANVIFTGTAAQWLLSGLDAGDNLGERL DGLGHTAVGLAVFAAFVIGLGHALLSRKRSSWRLPSLPDDLARRLSPYPWWIAIIAALGGMVTEINAAVGASLAAEITAQ ACFALLVAAVVAASVRQLNAPLPVPAQEPAAGEDAAPAPAAPPARPLWVGLLVACAGIASLAVLLLVAFGYIALAGALAR QMVWSGVAFATAYLLYQLVDDLCDAMLSSRSGFGRRLHTGMGIDPGLLDQAAVVLSGALRVVLFFYLVIALLAPFGTGPD ELFRRGSAMDQGLNLGNFALAPQALLTALGVVVAGFIGIRVIKRWLSDRYFPSTTLEPGMRSSITTLLGYFGGVMVIAAA LAALGISVERIAWVASALSVGIGFGLQAIVQNFISGLILLAERPVKVGDWVKLGDTEGDIRRINVRATEIQLGDHSTVIV PNSEFITKTVRNMTWGGSQGRVLLRLPAPLDTDAQRMRALILDAFKAHESILESPGPSVTLEDIVSGTLTFLAIGYVSNP RNAGGVKSDLLFSILESLRAAGLALSPPATTAVAPLSATAALPPREPAGTPTPGTA
Specific function: Unknown
COG id: COG3264
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI2367355, Length=213, Percent_Identity=34.2723004694836, Blast_Score=132, Evalue=7e-32, Organism=Escherichia coli, GI1786670, Length=239, Percent_Identity=31.7991631799163, Blast_Score=127, Evalue=3e-30, Organism=Escherichia coli, GI1789291, Length=261, Percent_Identity=22.6053639846743, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR006686 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 89669; Mature: 89669
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDATIHSLSLLRFLRRLPRTALAMILLAACLLAWPPGMVQAAPQVPASAPASASSAAASR CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHHH AAAAAAAGNIVDPDTPLPSVDELRKRLEAIPRKLGDQDDGRKLVNEAYAVGATAEQVVAR HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH RTADLADLDSRLAGLGPAPEKGAPADSPDVVQQRSALAKQRATVDADLKLARLIAVDAEQ HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGADLLRQRRQQFQAELTARADSPLGAAFWRNLRAAWPTDTERLSVLAIEARQAAQRALE HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC PERRRTFLVSLLGALLLLVVGNWAGERLLVRIAPAKLPAGRLRRSLLASASVLANVIFTG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC TAAQWLLSGLDAGDNLGERLDGLGHTAVGLAVFAAFVIGLGHALLSRKRSSWRLPSLPDD HHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH LARRLSPYPWWIAIIAALGGMVTEINAAVGASLAAEITAQACFALLVAAVVAASVRQLNA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLPVPAQEPAAGEDAAPAPAAPPARPLWVGLLVACAGIASLAVLLLVAFGYIALAGALAR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QMVWSGVAFATAYLLYQLVDDLCDAMLSSRSGFGRRLHTGMGIDPGLLDQAAVVLSGALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH VVLFFYLVIALLAPFGTGPDELFRRGSAMDQGLNLGNFALAPQALLTALGVVVAGFIGIR HHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VIKRWLSDRYFPSTTLEPGMRSSITTLLGYFGGVMVIAAALAALGISVERIAWVASALSV HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GIGFGLQAIVQNFISGLILLAERPVKVGDWVKLGDTEGDIRRINVRATEIQLGDHSTVIV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEE PNSEFITKTVRNMTWGGSQGRVLLRLPAPLDTDAQRMRALILDAFKAHESILESPGPSVT CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LEDIVSGTLTFLAIGYVSNPRNAGGVKSDLLFSILESLRAAGLALSPPATTAVAPLSATA HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHC ALPPREPAGTPTPGTA CCCCCCCCCCCCCCCC >Mature Secondary Structure MDATIHSLSLLRFLRRLPRTALAMILLAACLLAWPPGMVQAAPQVPASAPASASSAAASR CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHHH AAAAAAAGNIVDPDTPLPSVDELRKRLEAIPRKLGDQDDGRKLVNEAYAVGATAEQVVAR HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH RTADLADLDSRLAGLGPAPEKGAPADSPDVVQQRSALAKQRATVDADLKLARLIAVDAEQ HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGADLLRQRRQQFQAELTARADSPLGAAFWRNLRAAWPTDTERLSVLAIEARQAAQRALE HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC PERRRTFLVSLLGALLLLVVGNWAGERLLVRIAPAKLPAGRLRRSLLASASVLANVIFTG HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC TAAQWLLSGLDAGDNLGERLDGLGHTAVGLAVFAAFVIGLGHALLSRKRSSWRLPSLPDD HHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH LARRLSPYPWWIAIIAALGGMVTEINAAVGASLAAEITAQACFALLVAAVVAASVRQLNA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLPVPAQEPAAGEDAAPAPAAPPARPLWVGLLVACAGIASLAVLLLVAFGYIALAGALAR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QMVWSGVAFATAYLLYQLVDDLCDAMLSSRSGFGRRLHTGMGIDPGLLDQAAVVLSGALR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH VVLFFYLVIALLAPFGTGPDELFRRGSAMDQGLNLGNFALAPQALLTALGVVVAGFIGIR HHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VIKRWLSDRYFPSTTLEPGMRSSITTLLGYFGGVMVIAAALAALGISVERIAWVASALSV HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH GIGFGLQAIVQNFISGLILLAERPVKVGDWVKLGDTEGDIRRINVRATEIQLGDHSTVIV HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEE PNSEFITKTVRNMTWGGSQGRVLLRLPAPLDTDAQRMRALILDAFKAHESILESPGPSVT CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LEDIVSGTLTFLAIGYVSNPRNAGGVKSDLLFSILESLRAAGLALSPPATTAVAPLSATA HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHC ALPPREPAGTPTPGTA CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3042771 [H]