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The map label for this gene is yliC [C]

Identifier: 120612261

GI number: 120612261

Start: 3986612

End: 3987613

Strand: Direct

Name: yliC [C]

Synonym: Aave_3614

Alternate gene names: 120612261

Gene position: 3986612-3987613 (Clockwise)

Preceding gene: 120612259

Following gene: 120612262

Centisome position: 74.48

GC content: 69.96

Gene sequence:

>1002_bases
ATGCTGCGCCTTTCCGCCCACGCCCCCGACCGCCTCTCCATGGGACCGTTCCTTTTCAAGCGCCTGCTCACGTTCGCCGC
CACCCTCGCCGGGGCGTCGGTGGTCGTGTTCCTGGTGCTGGAGATCCTGCCCGGCAATGCCGCGCAGGTAATGATGGGCC
CCGACGCGTCTCCCGAGGCGGTGGAGGCTCTGGCCGCCCGGCTGGGCCTGGACCAGCCCGCGCCGCTGCGCTACGTGCAG
TGGATCGGCGGCCTGCTGTCGGGCGACATGGGAACCAGCCTGGCCTACGGCACGCCCGTGCGCGACCTGGTCCTGGAGCG
CCTGGCGCTGACGGTGCCGCTGGCGGTGATGGCGATGGCGATCACGACCGTGCTCGCGCTGCTGGCGGGGGTGTACGCGG
CATCCCGCCATCGCCGCTGGGGCGACGTGGGGGTGATGGGGCTGGCGCAGATCGGCATCGCGATCCCCAATTTCTGGTTC
GCGATCCTGCTGATCCTGCTGTTCTCGGTGAAGCTGCAGTGGTTCTCGGCGGGGGGGTTTCCCGGCTGGACGGAAGCATC
GGGCGGCAGTCCGCTCGCGGCGCTGCAGGCGCTGCTGCTGCCCGCAGTGTCGCTGGCGGTGGTGCAGGCCGCCATCCTCG
CGCGCATCACGCGCTCCGCGGTGCTGGAGGTGCTGCGCGAGGATTTCGTGCGCACGGCCCGGGCCAAGGGCCTGTCGCGG
CGCTCGGCGCTCTGGGGCCACGTGCTGCGCAACGCGATGATTCCCGTGGTCACCGTCATGGGGCTGCAGTTCGCGAACCT
GCTGGCCGGCACGATCGTCGTGGAAAACGTCTTCTACCTGCCGGGGCTGGGCCGGCTGATCTTCCAGTCGATCGCGAACC
GCGACCTCGTCGTGGTGCGCAACTGCGTGATGCTGCTGGCGGCCATGGTGATCGTGGTGAACTTCGCCGTGGACCTGCTC
TACGCGGCGATCGATCCCCGCGTGAAAGCGAGCGGTCTCTGA

Upstream 100 bases:

>100_bases
GAAACGGGCGTCATGGAAGGATTATCCCAGCCCGCCATCCCCATGCCGTGCCAGGGGCCGGCGGCCTCCGGCCTCGGAAG
GCCCCGGCGTGTTTGCCGCT

Downstream 100 bases:

>100_bases
TGCGCACGCCGCTCCGCGCCCCCGAGCCTGCCGCCACCCGGCCCGCCATGGCAGCGGACGGGCTGCGTCGCGCCCTGCGG
CATCCCAGCTTCGCCCTCGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLRLSAHAPDRLSMGPFLFKRLLTFAATLAGASVVVFLVLEILPGNAAQVMMGPDASPEAVEALAARLGLDQPAPLRYVQ
WIGGLLSGDMGTSLAYGTPVRDLVLERLALTVPLAVMAMAITTVLALLAGVYAASRHRRWGDVGVMGLAQIGIAIPNFWF
AILLILLFSVKLQWFSAGGFPGWTEASGGSPLAALQALLLPAVSLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSR
RSALWGHVLRNAMIPVVTVMGLQFANLLAGTIVVENVFYLPGLGRLIFQSIANRDLVVVRNCVMLLAAMVIVVNFAVDLL
YAAIDPRVKASGL

Sequences:

>Translated_333_residues
MLRLSAHAPDRLSMGPFLFKRLLTFAATLAGASVVVFLVLEILPGNAAQVMMGPDASPEAVEALAARLGLDQPAPLRYVQ
WIGGLLSGDMGTSLAYGTPVRDLVLERLALTVPLAVMAMAITTVLALLAGVYAASRHRRWGDVGVMGLAQIGIAIPNFWF
AILLILLFSVKLQWFSAGGFPGWTEASGGSPLAALQALLLPAVSLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSR
RSALWGHVLRNAMIPVVTVMGLQFANLLAGTIVVENVFYLPGLGRLIFQSIANRDLVVVRNCVMLLAAMVIVVNFAVDLL
YAAIDPRVKASGL
>Mature_333_residues
MLRLSAHAPDRLSMGPFLFKRLLTFAATLAGASVVVFLVLEILPGNAAQVMMGPDASPEAVEALAARLGLDQPAPLRYVQ
WIGGLLSGDMGTSLAYGTPVRDLVLERLALTVPLAVMAMAITTVLALLAGVYAASRHRRWGDVGVMGLAQIGIAIPNFWF
AILLILLFSVKLQWFSAGGFPGWTEASGGSPLAALQALLLPAVSLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSR
RSALWGHVLRNAMIPVVTVMGLQFANLLAGTIVVENVFYLPGLGRLIFQSIANRDLVVVRNCVMLLAAMVIVVNFAVDLL
YAAIDPRVKASGL

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=40.8945686900958, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=37.6854599406528, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=36.0759493670886, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=34.6031746031746, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=35.2409638554217, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=30.2238805970149, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788504, Length=368, Percent_Identity=27.1739130434783, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35443; Mature: 35443

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSAHAPDRLSMGPFLFKRLLTFAATLAGASVVVFLVLEILPGNAAQVMMGPDASPEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
VEALAARLGLDQPAPLRYVQWIGGLLSGDMGTSLAYGTPVRDLVLERLALTVPLAVMAMA
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ITTVLALLAGVYAASRHRRWGDVGVMGLAQIGIAIPNFWFAILLILLFSVKLQWFSAGGF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGWTEASGGSPLAALQALLLPAVSLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RSALWGHVLRNAMIPVVTVMGLQFANLLAGTIVVENVFYLPGLGRLIFQSIANRDLVVVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
NCVMLLAAMVIVVNFAVDLLYAAIDPRVKASGL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MLRLSAHAPDRLSMGPFLFKRLLTFAATLAGASVVVFLVLEILPGNAAQVMMGPDASPEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
VEALAARLGLDQPAPLRYVQWIGGLLSGDMGTSLAYGTPVRDLVLERLALTVPLAVMAMA
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ITTVLALLAGVYAASRHRRWGDVGVMGLAQIGIAIPNFWFAILLILLFSVKLQWFSAGGF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGWTEASGGSPLAALQALLLPAVSLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RSALWGHVLRNAMIPVVTVMGLQFANLLAGTIVVENVFYLPGLGRLIFQSIANRDLVVVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
NCVMLLAAMVIVVNFAVDLLYAAIDPRVKASGL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]