Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yggV [C]
Identifier: 120612225
GI number: 120612225
Start: 3949880
End: 3950479
Strand: Reverse
Name: yggV [C]
Synonym: Aave_3578
Alternate gene names: 120612225
Gene position: 3950479-3949880 (Counterclockwise)
Preceding gene: 120612226
Following gene: 120612224
Centisome position: 73.8
GC content: 68.17
Gene sequence:
>600_bases ATGAAACTCGTCCTCGCATCCAACAACCGCGGCAAGCTGGCCGAGCTGCAGAGCATGTTCTCTCCCCTGGGCGTGGAGCT GGTACGGCAGGCGGATCTCGGCGTGGGCGAGGCGGACGAGCCCTTCCATACCTTCGTGGAGAATGCGCTGGCCAAGGCGC GTTTCGCCGCGGAGCACACCGGGCTGCCGGCGCTGGCCGACGATGCGGGCCTGTGCGTGGATGCCTTCGGGGGACAGCCG GGCGTGCAGACGGCTTATTACGCCACCCGTTTCGGCTACGAGAAGGGCGACGCGAACAACGTGCGTGCGTTGCTGGAGCA GATGCGGGGCGTCGCTTCGCGGCGGGCGGCGATGGTGAGTACGCTCGTGGCCGTGCGCAGTCCCGACGATCCGGAACCTC TCATCGCCGTGGGCCGGGTGGTCGGAGAGATCGCCACGGAGCCGCGCGGCGACGGGGGCTTCGGCTTCGATCCGGTGATG TTCATCCCGGAGTTCGGCAAGACGTTCGCCGAGTTGCCCGTGGAGGTGAAGAACGCGCACAGCCACCGGGGGCGGTCCGC GCAGCAGATGCTCGCGCTCATGCGGGAACGCTGGTTCTGA
Upstream 100 bases:
>100_bases TGGCCGCCCGGGGCGTGGACGCCCTCATCGCCCTGCAGCGGCAGGCGTTGTCGGCGCCGGCATCCGGCCTGTGAACCCCT TTCCCGAAAGCATTCCCGCC
Downstream 100 bases:
>100_bases TCCACCCGGCACCCCGGCCCGAACGCCTTTTCCCCTCCGGCATTTCCCGTCTTCCTCTGCTTTCCATCCCGTGTCCATTC CCATCGTTCCTGCCGCCACT
Product: putative deoxyribonucleotide triphosphate pyrophosphatase
Products: NA
Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MKLVLASNNRGKLAELQSMFSPLGVELVRQADLGVGEADEPFHTFVENALAKARFAAEHTGLPALADDAGLCVDAFGGQP GVQTAYYATRFGYEKGDANNVRALLEQMRGVASRRAAMVSTLVAVRSPDDPEPLIAVGRVVGEIATEPRGDGGFGFDPVM FIPEFGKTFAELPVEVKNAHSHRGRSAQQMLALMRERWF
Sequences:
>Translated_199_residues MKLVLASNNRGKLAELQSMFSPLGVELVRQADLGVGEADEPFHTFVENALAKARFAAEHTGLPALADDAGLCVDAFGGQP GVQTAYYATRFGYEKGDANNVRALLEQMRGVASRRAAMVSTLVAVRSPDDPEPLIAVGRVVGEIATEPRGDGGFGFDPVM FIPEFGKTFAELPVEVKNAHSHRGRSAQQMLALMRERWF >Mature_199_residues MKLVLASNNRGKLAELQSMFSPLGVELVRQADLGVGEADEPFHTFVENALAKARFAAEHTGLPALADDAGLCVDAFGGQP GVQTAYYATRFGYEKGDANNVRALLEQMRGVASRRAAMVSTLVAVRSPDDPEPLIAVGRVVGEIATEPRGDGGFGFDPVM FIPEFGKTFAELPVEVKNAHSHRGRSAQQMLALMRERWF
Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions
COG id: COG0127
COG function: function code F; Xanthosine triphosphate pyrophosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAM1 NTPase family
Homologues:
Organism=Escherichia coli, GI1789324, Length=196, Percent_Identity=47.4489795918367, Blast_Score=170, Evalue=5e-44, Organism=Drosophila melanogaster, GI19920712, Length=198, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NTPA_ACIAC (A1TT41)
Other databases:
- EMBL: CP000512 - RefSeq: YP_971903.1 - ProteinModelPortal: A1TT41 - SMR: A1TT41 - STRING: A1TT41 - GeneID: 4668547 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_3578 - eggNOG: COG0127 - HOGENOM: HBG697237 - OMA: VYTADWA - PhylomeDB: A1TT41 - ProtClustDB: PRK00120 - BioCyc: AAVE397945:AAVE_3578-MONOMER - HAMAP: MF_01405 - InterPro: IPR002637 - InterPro: IPR020922 - PANTHER: PTHR11067 - TIGRFAMs: TIGR00042
Pfam domain/function: PF01725 Ham1p_like
EC number: =3.6.1.15
Molecular weight: Translated: 21505; Mature: 21505
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVLASNNRGKLAELQSMFSPLGVELVRQADLGVGEADEPFHTFVENALAKARFAAEHT CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC GLPALADDAGLCVDAFGGQPGVQTAYYATRFGYEKGDANNVRALLEQMRGVASRRAAMVS CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TLVAVRSPDDPEPLIAVGRVVGEIATEPRGDGGFGFDPVMFIPEFGKTFAELPVEVKNAH HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCHHHHHCC SHRGRSAQQMLALMRERWF CCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKLVLASNNRGKLAELQSMFSPLGVELVRQADLGVGEADEPFHTFVENALAKARFAAEHT CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC GLPALADDAGLCVDAFGGQPGVQTAYYATRFGYEKGDANNVRALLEQMRGVASRRAAMVS CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TLVAVRSPDDPEPLIAVGRVVGEIATEPRGDGGFGFDPVMFIPEFGKTFAELPVEVKNAH HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCHHHHHCC SHRGRSAQQMLALMRERWF CCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA