Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is rph [H]

Identifier: 120612226

GI number: 120612226

Start: 3950506

End: 3951267

Strand: Reverse

Name: rph [H]

Synonym: Aave_3579

Alternate gene names: 120612226

Gene position: 3951267-3950506 (Counterclockwise)

Preceding gene: 120612227

Following gene: 120612225

Centisome position: 73.82

GC content: 71.52

Gene sequence:

>762_bases
ATGCCTTCATCTTCCCTTTCCCATCCTTTCGAGCGCAGCGCGGGCCGCGGCGTCGATGCCCTGCGCCCCGTGCGCATCAC
CCGCCACTACACCATGCACGCGGAAGGCTCGGTGCTGGTCGAGTTCGGGCATACGAAGGTGCTGTGCACGGCTTCTGTCG
AGGAGCGGGTGCCGCCGCACAAGCGCGGCAGCGGGGAAGGCTGGGTGACGGCGGAGTACGGCATGCTGCCGCGCGCGACG
CACACCCGCAGCGACCGCGAGGCCGCGCGGGGCAAGCAGAGCGGCCGCACGCAGGAAATCCAGCGCCTGATCGGCCGCAG
CCTGCGGGCGGTGTTCGACCTGCGCGCGCTGGGCGAGCGCACCATCCAGCTCGATTGCGACGTGCTGCAGGCCGACGGCG
GTACGCGCACGGCGGCCATCACCGGTGCCTGGGTCGCCGCGCACGACGCCGTGTCGGCCCTGCTGGAGGGCGGCAAGATC
GCCGCGTCGCCCATCACGGCGCCGCTGGCGGCCGTGTCCGTGGGCATCGTGCAGGGCACACCGCTGCTCGACCTGGAGTA
CACCGAGGATGTGCAGTGCGACACCGACATGAACGTCGTCATGATGGACGGCGGCCGGTTCGTCGAAGTGCAGGGGACGG
CGGAAGGCATCGCGTTCACGCGCAGCGAGATGGACCGGCTGCTCGACCTGGCCGCCCGGGGCGTGGACGCCCTCATCGCC
CTGCAGCGGCAGGCGTTGTCGGCGCCGGCATCCGGCCTGTGA

Upstream 100 bases:

>100_bases
GCTGCCTGAGCCTGCGTTGCGTCCTCCGGTGCGGATCGCGCGCCTTCCATGCCGGTCGCGGGCCGGATGGCCCATTCACT
CCTTTCACGCGGTGCAACCC

Downstream 100 bases:

>100_bases
ACCCCTTTCCCGAAAGCATTCCCGCCATGAAACTCGTCCTCGCATCCAACAACCGCGGCAAGCTGGCCGAGCTGCAGAGC
ATGTTCTCTCCCCTGGGCGT

Product: ribonuclease PH

Products: NA

Alternate protein names: RNase PH; tRNA nucleotidyltransferase [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT
HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKI
AASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA
LQRQALSAPASGL

Sequences:

>Translated_253_residues
MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRAT
HTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKI
AASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA
LQRQALSAPASGL
>Mature_252_residues
PSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPHKRGSGEGWVTAEYGMLPRATH
TRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGERTIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIA
ASPITAPLAAVSVGIVQGTPLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIAL
QRQALSAPASGL

Specific function: Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [H]

COG id: COG0689

COG function: function code J; RNase PH

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase PH family [H]

Homologues:

Organism=Escherichia coli, GI157672248, Length=209, Percent_Identity=67.4641148325359, Blast_Score=286, Evalue=9e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001247
- InterPro:   IPR015847
- InterPro:   IPR020568
- InterPro:   IPR002381
- InterPro:   IPR018336 [H]

Pfam domain/function: PF01138 RNase_PH; PF03725 RNase_PH_C [H]

EC number: =2.7.7.56 [H]

Molecular weight: Translated: 26998; Mature: 26867

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01277 RIBONUCLEASE_PH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPH
CCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEECCEEEEEECCHHHCCCCC
KRGSGEGWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGER
CCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE
TIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGT
EEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEECCC
PLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA
CEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHH
LQRQALSAPASGL
HHHHHHCCCCCCC
>Mature Secondary Structure 
PSSSLSHPFERSAGRGVDALRPVRITRHYTMHAEGSVLVEFGHTKVLCTASVEERVPPH
CCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEECCEEEEEECCHHHCCCCC
KRGSGEGWVTAEYGMLPRATHTRSDREAARGKQSGRTQEIQRLIGRSLRAVFDLRALGER
CCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCE
TIQLDCDVLQADGGTRTAAITGAWVAAHDAVSALLEGGKIAASPITAPLAAVSVGIVQGT
EEEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHEECCC
PLLDLEYTEDVQCDTDMNVVMMDGGRFVEVQGTAEGIAFTRSEMDRLLDLAARGVDALIA
CEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHH
LQRQALSAPASGL
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA