Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yggW [H]

Identifier: 120612224

GI number: 120612224

Start: 3948559

End: 3949731

Strand: Reverse

Name: yggW [H]

Synonym: Aave_3577

Alternate gene names: 120612224

Gene position: 3949731-3948559 (Counterclockwise)

Preceding gene: 120612225

Following gene: 120612221

Centisome position: 73.79

GC content: 69.39

Gene sequence:

>1173_bases
ATGCGGCCCGGCGTCCTGAGCCTCGGCGCTCCGCCACCGCTGTCGCTGTACGTGCACCTGCCCTGGTGCCTGAAGAAGTG
CCCCTACTGCGACTTCAATTCGCACGAGGCGCGTGGCGGCGCGGGGGCGCTGCAGGAGCAGCGCTACCTGGATGCGCTCA
TGGCGGACCTGGAAGCCGCCCTGCCGCTCGTCTGGGGGCGCACGGTGCACAGCGTGTTCATCGGCGGGGGAACGCCCAGC
CTGTTCTCGCCGCAAGCCATCGACCAGCTGATCGGCGGGGTGCGGGCGCGGCTGCGGCTCGAGGCGGACGCCGAGATCAC
GCTCGAGGCCAATCCCGGGACCTTCGAGAAGGACCGTTTCCGCGCCTACCGCGCGGCCGGGGTGACGCGGCTGTCCGTCG
GCGTGCAGAGCTTCGACGACCGCTTCCTGCAGGCGCTGGGGCGGGTGCATGACCGGGCGCAGGCCCTGGCTGCGGTGCAG
GAGGCCGCGCAGGCGTTCGATACGTTCAACCTCGACATCATGTACGCGCTGCCCGGGCAGAGCCTGGAGGACCTGGAGCG
CGACGTGGCGCTGGCGCTGTCGCTGCAGCCGCCGCACCTGTCCATCTACCACCTGACCATCGAGCCCAACACCTACTTCG
CCAGGTTCCCCCCGGTGGTGCCGGAGGACGATCTGGCCTATGCCATGCTGGACCGGATCACCGCGATGACGGAGGCGGCG
GGGCTGCGCCGCTACGAGATTTCTGCCTATTCCCGCCCAGGGCACCAGTGCGTGCACAACACGAACTATTGGCAGTTCGG
GGACTATCTCGGCATCGGCGCGGGGGCGCACGGCAAGCTCAGCTTCGCCCACCGCGTGGTGCGGCAGGTGCGGTTCCGCG
ATCCGCAGCGCTACATGGAGCAGGCCCTGGCCGGCAATGCCGTGGCGCAGGACCACGAAGTGCGCAGGGCGGATCTGCCG
TTCGAGTTCATGCTCAATGCGCTGCGCCTGCGCGAGGGCTTCGCGCTGCAGGATTTCATGGACCGCACGGGACTGCCATT
GAGCGCCATCGCGGGCGCGCTGGACGAGGCCGGGCGCAAGGGCCTCATCGTGAGGGATGCTGCGCGCGTACGCCCCACGG
AGCGCGGGTTCGATTTCCTCAGCGACCTGCAGGAGCTATTCCTGGCGGACTGA

Upstream 100 bases:

>100_bases
GTCTTCCTCTGCTTTCCATCCCGTGTCCATTCCCATCGTTCCTGCCGCCACTCCGGGCGCCGAAGAGGCGCCAGCCCCGC
TGCGCGATGTGCGGCATTCG

Downstream 100 bases:

>100_bases
GCGGGGTTGCGGTGCGGGCTGCGGCCCGGCAGGTCAGCCGCAGCGGGCCGCGACGATGCGGCCGGAGGCGTCCACCTCGA
GATTGAGGCGCTGCGGGTCA

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS
LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ
EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA
GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP
FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD

Sequences:

>Translated_390_residues
MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS
LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ
EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA
GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP
FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD
>Mature_390_residues
MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS
LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ
EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA
GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP
FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=310, Percent_Identity=36.7741935483871, Blast_Score=181, Evalue=9e-46,
Organism=Escherichia coli, GI1789325, Length=381, Percent_Identity=48.2939632545932, Blast_Score=354, Evalue=6e-99,
Organism=Escherichia coli, GI87082341, Length=204, Percent_Identity=34.8039215686275, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43298; Mature: 43298

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAA
CCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LPLVWGRTVHSVFIGGGTPSLFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRF
HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCHHHH
RAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQEAAQAFDTFNLDIMYALPGQ
HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
SLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA
CHHHHHHHHEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYME
CCEEEEEECCCCCCHHHHCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
QALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRK
HHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC
GLIVRDAARVRPTERGFDFLSDLQELFLAD
CEEEECHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAA
CCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LPLVWGRTVHSVFIGGGTPSLFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRF
HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCHHHH
RAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQEAAQAFDTFNLDIMYALPGQ
HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
SLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA
CHHHHHHHHEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYME
CCEEEEEECCCCCCHHHHCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
QALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRK
HHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC
GLIVRDAARVRPTERGFDFLSDLQELFLAD
CEEEECHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]