Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is yggW [H]
Identifier: 120612224
GI number: 120612224
Start: 3948559
End: 3949731
Strand: Reverse
Name: yggW [H]
Synonym: Aave_3577
Alternate gene names: 120612224
Gene position: 3949731-3948559 (Counterclockwise)
Preceding gene: 120612225
Following gene: 120612221
Centisome position: 73.79
GC content: 69.39
Gene sequence:
>1173_bases ATGCGGCCCGGCGTCCTGAGCCTCGGCGCTCCGCCACCGCTGTCGCTGTACGTGCACCTGCCCTGGTGCCTGAAGAAGTG CCCCTACTGCGACTTCAATTCGCACGAGGCGCGTGGCGGCGCGGGGGCGCTGCAGGAGCAGCGCTACCTGGATGCGCTCA TGGCGGACCTGGAAGCCGCCCTGCCGCTCGTCTGGGGGCGCACGGTGCACAGCGTGTTCATCGGCGGGGGAACGCCCAGC CTGTTCTCGCCGCAAGCCATCGACCAGCTGATCGGCGGGGTGCGGGCGCGGCTGCGGCTCGAGGCGGACGCCGAGATCAC GCTCGAGGCCAATCCCGGGACCTTCGAGAAGGACCGTTTCCGCGCCTACCGCGCGGCCGGGGTGACGCGGCTGTCCGTCG GCGTGCAGAGCTTCGACGACCGCTTCCTGCAGGCGCTGGGGCGGGTGCATGACCGGGCGCAGGCCCTGGCTGCGGTGCAG GAGGCCGCGCAGGCGTTCGATACGTTCAACCTCGACATCATGTACGCGCTGCCCGGGCAGAGCCTGGAGGACCTGGAGCG CGACGTGGCGCTGGCGCTGTCGCTGCAGCCGCCGCACCTGTCCATCTACCACCTGACCATCGAGCCCAACACCTACTTCG CCAGGTTCCCCCCGGTGGTGCCGGAGGACGATCTGGCCTATGCCATGCTGGACCGGATCACCGCGATGACGGAGGCGGCG GGGCTGCGCCGCTACGAGATTTCTGCCTATTCCCGCCCAGGGCACCAGTGCGTGCACAACACGAACTATTGGCAGTTCGG GGACTATCTCGGCATCGGCGCGGGGGCGCACGGCAAGCTCAGCTTCGCCCACCGCGTGGTGCGGCAGGTGCGGTTCCGCG ATCCGCAGCGCTACATGGAGCAGGCCCTGGCCGGCAATGCCGTGGCGCAGGACCACGAAGTGCGCAGGGCGGATCTGCCG TTCGAGTTCATGCTCAATGCGCTGCGCCTGCGCGAGGGCTTCGCGCTGCAGGATTTCATGGACCGCACGGGACTGCCATT GAGCGCCATCGCGGGCGCGCTGGACGAGGCCGGGCGCAAGGGCCTCATCGTGAGGGATGCTGCGCGCGTACGCCCCACGG AGCGCGGGTTCGATTTCCTCAGCGACCTGCAGGAGCTATTCCTGGCGGACTGA
Upstream 100 bases:
>100_bases GTCTTCCTCTGCTTTCCATCCCGTGTCCATTCCCATCGTTCCTGCCGCCACTCCGGGCGCCGAAGAGGCGCCAGCCCCGC TGCGCGATGTGCGGCATTCG
Downstream 100 bases:
>100_bases GCGGGGTTGCGGTGCGGGCTGCGGCCCGGCAGGTCAGCCGCAGCGGGCCGCGACGATGCGGCCGGAGGCGTCCACCTCGA GATTGAGGCGCTGCGGGTCA
Product: putative oxygen-independent coproporphyrinogen III oxidase
Products: Protoporphyrinogen IX; CO2; H2O
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD
Sequences:
>Translated_390_residues MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD >Mature_390_residues MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAALPLVWGRTVHSVFIGGGTPS LFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRFRAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQ EAAQAFDTFNLDIMYALPGQSLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYMEQALAGNAVAQDHEVRRADLP FEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRKGLIVRDAARVRPTERGFDFLSDLQELFLAD
Specific function: Unknown
COG id: COG0635
COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]
Homologues:
Organism=Homo sapiens, GI8922911, Length=310, Percent_Identity=36.7741935483871, Blast_Score=181, Evalue=9e-46, Organism=Escherichia coli, GI1789325, Length=381, Percent_Identity=48.2939632545932, Blast_Score=354, Evalue=6e-99, Organism=Escherichia coli, GI87082341, Length=204, Percent_Identity=34.8039215686275, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR004559 - InterPro: IPR010723 - InterPro: IPR007197 [H]
Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]
EC number: 1.3.3.3
Molecular weight: Translated: 43298; Mature: 43298
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAA CCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LPLVWGRTVHSVFIGGGTPSLFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRF HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCHHHH RAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQEAAQAFDTFNLDIMYALPGQ HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC SLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA CHHHHHHHHEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYME CCEEEEEECCCCCCHHHHCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH QALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRK HHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC GLIVRDAARVRPTERGFDFLSDLQELFLAD CEEEECHHHCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRPGVLSLGAPPPLSLYVHLPWCLKKCPYCDFNSHEARGGAGALQEQRYLDALMADLEAA CCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LPLVWGRTVHSVFIGGGTPSLFSPQAIDQLIGGVRARLRLEADAEITLEANPGTFEKDRF HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCHHHH RAYRAAGVTRLSVGVQSFDDRFLQALGRVHDRAQALAAVQEAAQAFDTFNLDIMYALPGQ HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC SLEDLERDVALALSLQPPHLSIYHLTIEPNTYFARFPPVVPEDDLAYAMLDRITAMTEAA CHHHHHHHHEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH GLRRYEISAYSRPGHQCVHNTNYWQFGDYLGIGAGAHGKLSFAHRVVRQVRFRDPQRYME CCEEEEEECCCCCCHHHHCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH QALAGNAVAQDHEVRRADLPFEFMLNALRLREGFALQDFMDRTGLPLSAIAGALDEAGRK HHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCC GLIVRDAARVRPTERGFDFLSDLQELFLAD CEEEECHHHCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Coproporphyrinogen III; O2; H+
Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]