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The map label for this gene is chrR [H]

Identifier: 120612216

GI number: 120612216

Start: 3940691

End: 3941362

Strand: Reverse

Name: chrR [H]

Synonym: Aave_3569

Alternate gene names: 120612216

Gene position: 3941362-3940691 (Counterclockwise)

Preceding gene: 120612217

Following gene: 120612210

Centisome position: 73.63

GC content: 71.88

Gene sequence:

>672_bases
ATGACGATCCATCATCATCCCGGAGATGACCTGCTCCTCGACCTGGCCGCGGGGCGGCTGCCGCCGGGGCCGGCGCTGCT
GGCTTCGGTGCATGCCGAGATGTGCCCGCAGTGCGGGCAGCGCCTGAGGGCCCTGGAGGCCGCCGGCGGCGTTCTGCTGG
AATCCCTGCCGCCAGAGACGCTGAGGCCCGACGCGCTTTCCCGCGTGCTGGGGGCCATCGATGCCCTTCCCGGGGACGAT
GCTCGCCGGCCGGGTGCGGCTGCCGAACCGGTAGCTGGCGGCCCTGACTGGCCTGCGGGAACACCGTGGCCGCAAGCGCT
GCGCGGCGTCGCGTTTTCGCCCTGGAAATGGATCGCCCCGGGCATGCGCTGGAGCCGCCCCCTCTCGCCGCCGGCCGGCG
ACGTGAACGTGTTCCTGCTGCGCATCGGCCCCGGCCGCAGCCTGCCTGCCCATACCCACGGCGGTTTGGAATGGACGCAG
GTGCTGCACGGCGCCTTCCATGACGGACATGCGTTGTTCGGCGCGGGGGATTTCGATGCCGCCGATGGCAACGTGCATCA
CCAGCCGGTGGTGCAGGGGCCGGGAGACTGCATCTGCCTGGCGGCCGTCGATGGCCGCCTGCGCTTCGACGGAATGCTGG
CGCGGCTGGCGGGCAGCCTGGTGGGCATGTAG

Upstream 100 bases:

>100_bases
CCCGGATCGCCGAGGATCTCGGCATCCCGCTGGGGACCGTGAAATCCCGCGTGCGCCTGGCCGTACGCCACCTGCGCCGC
CTGCTCGGCGCCCATGCGCC

Downstream 100 bases:

>100_bases
GGCCGGCCCCGGCGGGGCCAGGCCCCGGCCGTTCAGGCCGATGCGGGCGGAAACCACCGCAGGATGACCGCGCAGGCGAT
CGCGCTGGCGGCCCCGGTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTIHHHPGDDLLLDLAAGRLPPGPALLASVHAEMCPQCGQRLRALEAAGGVLLESLPPETLRPDALSRVLGAIDALPGDD
ARRPGAAAEPVAGGPDWPAGTPWPQALRGVAFSPWKWIAPGMRWSRPLSPPAGDVNVFLLRIGPGRSLPAHTHGGLEWTQ
VLHGAFHDGHALFGAGDFDAADGNVHHQPVVQGPGDCICLAAVDGRLRFDGMLARLAGSLVGM

Sequences:

>Translated_223_residues
MTIHHHPGDDLLLDLAAGRLPPGPALLASVHAEMCPQCGQRLRALEAAGGVLLESLPPETLRPDALSRVLGAIDALPGDD
ARRPGAAAEPVAGGPDWPAGTPWPQALRGVAFSPWKWIAPGMRWSRPLSPPAGDVNVFLLRIGPGRSLPAHTHGGLEWTQ
VLHGAFHDGHALFGAGDFDAADGNVHHQPVVQGPGDCICLAAVDGRLRFDGMLARLAGSLVGM
>Mature_222_residues
TIHHHPGDDLLLDLAAGRLPPGPALLASVHAEMCPQCGQRLRALEAAGGVLLESLPPETLRPDALSRVLGAIDALPGDDA
RRPGAAAEPVAGGPDWPAGTPWPQALRGVAFSPWKWIAPGMRWSRPLSPPAGDVNVFLLRIGPGRSLPAHTHGGLEWTQV
LHGAFHDGHALFGAGDFDAADGNVHHQPVVQGPGDCICLAAVDGRLRFDGMLARLAGSLVGM

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23264; Mature: 23133

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHHHPGDDLLLDLAAGRLPPGPALLASVHAEMCPQCGQRLRALEAAGGVLLESLPPET
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
LRPDALSRVLGAIDALPGDDARRPGAAAEPVAGGPDWPAGTPWPQALRGVAFSPWKWIAP
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCC
GMRWSRPLSPPAGDVNVFLLRIGPGRSLPAHTHGGLEWTQVLHGAFHDGHALFGAGDFDA
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCC
ADGNVHHQPVVQGPGDCICLAAVDGRLRFDGMLARLAGSLVGM
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIHHHPGDDLLLDLAAGRLPPGPALLASVHAEMCPQCGQRLRALEAAGGVLLESLPPET
CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
LRPDALSRVLGAIDALPGDDARRPGAAAEPVAGGPDWPAGTPWPQALRGVAFSPWKWIAP
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCC
GMRWSRPLSPPAGDVNVFLLRIGPGRSLPAHTHGGLEWTQVLHGAFHDGHALFGAGDFDA
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCC
ADGNVHHQPVVQGPGDCICLAAVDGRLRFDGMLARLAGSLVGM
CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]