Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612205
Identifier: 120612205
GI number: 120612205
Start: 3932036
End: 3932659
Strand: Reverse
Name: 120612205
Synonym: Aave_3558
Alternate gene names: NA
Gene position: 3932659-3932036 (Counterclockwise)
Preceding gene: 120612206
Following gene: 120612204
Centisome position: 73.47
GC content: 67.79
Gene sequence:
>624_bases ATGAACCAACGCTATCTGCTGATCCCCGCCACCATCGCTTTCGCCTGCGCCCTGCATGCCACGGGCACGCAGGCGCAGAC CGCCCCTACGCAGACGCAGCCCGGCGCGGGCGCCGCACGCTCGGTGGACGGAGCGGAGGGCCAGGCGTCGCGCCTGACAC GCGCCGAGAAGTCCTTCCTGGACGATGCCGCCCACAACGGCCATGCGGAAGTCAAGAGCAGCCAGCTGGCCCTGCAGAAG GCCCAGAACCCGAAGGTGCGTTCGTTCGCCCAGCAGATGGTGGACGACCATACCAAGGCCAACCAGGAACTGGCCGCGCT GGCGTCCGGAAAGAACGCGCGTGTGCCCGACGGCCCGTCGCTGATGCAGGAAGGCAAGCTCAAGCTGCTGGGCACCGCCG ACGGCGCGGACTTCGACAAGCGCTACATGGAAACCATGGGCCTGCAGGCGCACCGGGACACGATCGAGCTTTTCGAAAAG GGCGCCCGCGATGCGCGCGACCCGGAGGTGAAGGCTTTCGCGCAGAAGACCCTGCCGAAGCTGAAGCAGCATCTGGAGAT GGCGCAGCAGCTGGCCCAGGAAGTGGGCGTGAGCGCGGACAAGGCCGCGGCCAGCGGCAAGTGA
Upstream 100 bases:
>100_bases GAAGGGGGCCCGACCTGCCGCGCCATTGACTCGCTGCCATGCGGCCGCTGCCGCTGCCGCATGGAATTTCCCCGGTTGTT TTGCAAAAAGGAGTATCGCC
Downstream 100 bases:
>100_bases TCCGGCAGGCACGATCGGACCCCGCACCATGACGCATTCCGCCGTGCCTCCTTCCGGCACCGTGCAGGCGCCGGGCCCTG CTGCTGCCGCAGCGGTGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein-Like Protein; Secreted Protein; Lipoprotein; Exported Protein
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MNQRYLLIPATIAFACALHATGTQAQTAPTQTQPGAGAARSVDGAEGQASRLTRAEKSFLDDAAHNGHAEVKSSQLALQK AQNPKVRSFAQQMVDDHTKANQELAALASGKNARVPDGPSLMQEGKLKLLGTADGADFDKRYMETMGLQAHRDTIELFEK GARDARDPEVKAFAQKTLPKLKQHLEMAQQLAQEVGVSADKAAASGK
Sequences:
>Translated_207_residues MNQRYLLIPATIAFACALHATGTQAQTAPTQTQPGAGAARSVDGAEGQASRLTRAEKSFLDDAAHNGHAEVKSSQLALQK AQNPKVRSFAQQMVDDHTKANQELAALASGKNARVPDGPSLMQEGKLKLLGTADGADFDKRYMETMGLQAHRDTIELFEK GARDARDPEVKAFAQKTLPKLKQHLEMAQQLAQEVGVSADKAAASGK >Mature_207_residues MNQRYLLIPATIAFACALHATGTQAQTAPTQTQPGAGAARSVDGAEGQASRLTRAEKSFLDDAAHNGHAEVKSSQLALQK AQNPKVRSFAQQMVDDHTKANQELAALASGKNARVPDGPSLMQEGKLKLLGTADGADFDKRYMETMGLQAHRDTIELFEK GARDARDPEVKAFAQKTLPKLKQHLEMAQQLAQEVGVSADKAAASGK
Specific function: Unknown
COG id: COG3652
COG function: function code S; Predicted outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22104; Mature: 22104
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQRYLLIPATIAFACALHATGTQAQTAPTQTQPGAGAARSVDGAEGQASRLTRAEKSFL CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH DDAAHNGHAEVKSSQLALQKAQNPKVRSFAQQMVDDHTKANQELAALASGKNARVPDGPS HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LMQEGKLKLLGTADGADFDKRYMETMGLQAHRDTIELFEKGARDARDPEVKAFAQKTLPK HHHCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LKQHLEMAQQLAQEVGVSADKAAASGK HHHHHHHHHHHHHHHCCCCHHHCCCCC >Mature Secondary Structure MNQRYLLIPATIAFACALHATGTQAQTAPTQTQPGAGAARSVDGAEGQASRLTRAEKSFL CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH DDAAHNGHAEVKSSQLALQKAQNPKVRSFAQQMVDDHTKANQELAALASGKNARVPDGPS HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LMQEGKLKLLGTADGADFDKRYMETMGLQAHRDTIELFEKGARDARDPEVKAFAQKTLPK HHHCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LKQHLEMAQQLAQEVGVSADKAAASGK HHHHHHHHHHHHHHHCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA