Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is ribD [H]
Identifier: 120612202
GI number: 120612202
Start: 3928561
End: 3929694
Strand: Direct
Name: ribD [H]
Synonym: Aave_3555
Alternate gene names: 120612202
Gene position: 3928561-3929694 (Clockwise)
Preceding gene: 120612195
Following gene: 120612211
Centisome position: 73.39
GC content: 69.93
Gene sequence:
>1134_bases ATGTCCGTGCCCTCCGCTCCTGCCTCCCCCGCCGATTTGATGCAGCTTGCGCTCCAGCTGGCAGAAGACGGGCTCTACAG GACCTCCCCCAATCCCCGCGTGGGATGCGTGCTGGTGAACGCCGGCCAGCAGATCATCGGCCAGGGATCGACACAGCGCG CCGGTGGGCCCCACGCAGAAGTGATGGCGTTGCGCGATGCCCGGGCCCGGGGCCATGCCACGCACGGCGCCACTGCCTAC GTCACCCTGGAGCCCTGCTCCCACCACGGCCGCACGGGCCCCTGCTGCGATGCGCTGGTGGAAGCAGGCATCGCCCGCGT GGTCGCCTCGCTGGCCGATCCCAATCCGCTGGTGGCGGGACAGGGTTTCGAGCGTCTCCGGGGAGCGGGCGTACAAGTCG AAGTAGGCCCGGGCGCCGCGGCGTCGCGGGAACTCAACATCGGCTTCTTCAGCCGCATGCAGCGCGGCCTGCCCTGGGTG CGCATGAAGGCAGCCACGTCGCTGGATGGATTCACCGCACTGCCCGACGGCACCAGCCAGTGGATCACTTCGCCCGAAGC GCGCGCCGACGGGCACGCGTGGCGCGCCCGCGCCTGTGCCGTGCTCACCGGCATCGGCACCATCCTTGCGGACGATCCCC GGCTGGATGTGCGGGAGGCCGAGACGCCACGCCAGCCCCATCTGGCCATCATCGACAGCCATCTTCAGACACCGCCAGGC GCCCGCTTCTTCGAAGTGCCCCAGCGCCAGATACTGATCTACACGGCCAGTGCCGATTCTGCGAAGGCAGCAGTTCTGCA GGACCGCGGCGCACAGGTCATCGCCGCGCCGATGGCAGGCGACGGGCACATCGACCTGCATTGGGTGCTGCAGGACCTGG CGCGCCAGCGCAGCGTGAACGAACTGCACGTGGAAGCAGGTGCCCGGCTCAACGGCGCGCTCGTGCGTGCCCGGCTGGTG GACGAGATCCTGCTGTACATGGCGCCCACGCTGCTCGGAGCCGGCCGTGGCATGGCGCAATGGGGCCCGCCGGGCACGCT GGCCGGGGCCCATGCGATGGCATGGCAGGACATCGATCGGGTCGGTGCCGATCTGCGCATCATCGCGCGGGGAGCGGGGC GGGACGTTTTCTGA
Upstream 100 bases:
>100_bases AACAAACTGTTATGGTCCATGCCGGAATCTTAGGCCGGCCGCTTTCCGCTGGCGATGCCGTTCGGCGGGCCTATCCGACC AGTCGGCGCAAAATACCGGG
Downstream 100 bases:
>100_bases ACGTCCGCCAGAGCCGATCCGGGCCTTCGGGTGAACGCGGTATCAGACAGCCGCGAGCTCATGGCCTGAGCGGCGCCGAA AGCTCCCGTGCATGGACCTC
Product: riboflavin biosynthesis protein RibD
Products: NA
Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAY VTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWV RMKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLV DEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF
Sequences:
>Translated_377_residues MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAY VTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWV RMKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLV DEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF >Mature_376_residues SVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAYV TLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVR MKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPGA RFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLVD EILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF
Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the HTP reductase family [H]
Homologues:
Organism=Escherichia coli, GI1786616, Length=372, Percent_Identity=45.1612903225806, Blast_Score=276, Evalue=2e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 - InterPro: IPR004794 - InterPro: IPR011549 - InterPro: IPR002734 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]
EC number: =3.5.4.26; =1.1.1.193 [H]
Molecular weight: Translated: 39794; Mature: 39663
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAE CCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCHH VMALRDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAG EEEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC QGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQ CCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEHHCCCCCCEECCCCCHH WITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG HCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEHHCCCCCC ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVN CCEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCC ELHVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDR EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH VGADLRIIARGAGRDVF CCCCEEEEEECCCCCCC >Mature Secondary Structure SVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAE CCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCHH VMALRDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAG EEEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC QGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQ CCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEHHCCCCCCEECCCCCHH WITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG HCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEHHCCCCCC ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVN CCEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCC ELHVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDR EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH VGADLRIIARGAGRDVF CCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1406588; 9278503; 9068650 [H]