Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ribD [H]

Identifier: 120612202

GI number: 120612202

Start: 3928561

End: 3929694

Strand: Direct

Name: ribD [H]

Synonym: Aave_3555

Alternate gene names: 120612202

Gene position: 3928561-3929694 (Clockwise)

Preceding gene: 120612195

Following gene: 120612211

Centisome position: 73.39

GC content: 69.93

Gene sequence:

>1134_bases
ATGTCCGTGCCCTCCGCTCCTGCCTCCCCCGCCGATTTGATGCAGCTTGCGCTCCAGCTGGCAGAAGACGGGCTCTACAG
GACCTCCCCCAATCCCCGCGTGGGATGCGTGCTGGTGAACGCCGGCCAGCAGATCATCGGCCAGGGATCGACACAGCGCG
CCGGTGGGCCCCACGCAGAAGTGATGGCGTTGCGCGATGCCCGGGCCCGGGGCCATGCCACGCACGGCGCCACTGCCTAC
GTCACCCTGGAGCCCTGCTCCCACCACGGCCGCACGGGCCCCTGCTGCGATGCGCTGGTGGAAGCAGGCATCGCCCGCGT
GGTCGCCTCGCTGGCCGATCCCAATCCGCTGGTGGCGGGACAGGGTTTCGAGCGTCTCCGGGGAGCGGGCGTACAAGTCG
AAGTAGGCCCGGGCGCCGCGGCGTCGCGGGAACTCAACATCGGCTTCTTCAGCCGCATGCAGCGCGGCCTGCCCTGGGTG
CGCATGAAGGCAGCCACGTCGCTGGATGGATTCACCGCACTGCCCGACGGCACCAGCCAGTGGATCACTTCGCCCGAAGC
GCGCGCCGACGGGCACGCGTGGCGCGCCCGCGCCTGTGCCGTGCTCACCGGCATCGGCACCATCCTTGCGGACGATCCCC
GGCTGGATGTGCGGGAGGCCGAGACGCCACGCCAGCCCCATCTGGCCATCATCGACAGCCATCTTCAGACACCGCCAGGC
GCCCGCTTCTTCGAAGTGCCCCAGCGCCAGATACTGATCTACACGGCCAGTGCCGATTCTGCGAAGGCAGCAGTTCTGCA
GGACCGCGGCGCACAGGTCATCGCCGCGCCGATGGCAGGCGACGGGCACATCGACCTGCATTGGGTGCTGCAGGACCTGG
CGCGCCAGCGCAGCGTGAACGAACTGCACGTGGAAGCAGGTGCCCGGCTCAACGGCGCGCTCGTGCGTGCCCGGCTGGTG
GACGAGATCCTGCTGTACATGGCGCCCACGCTGCTCGGAGCCGGCCGTGGCATGGCGCAATGGGGCCCGCCGGGCACGCT
GGCCGGGGCCCATGCGATGGCATGGCAGGACATCGATCGGGTCGGTGCCGATCTGCGCATCATCGCGCGGGGAGCGGGGC
GGGACGTTTTCTGA

Upstream 100 bases:

>100_bases
AACAAACTGTTATGGTCCATGCCGGAATCTTAGGCCGGCCGCTTTCCGCTGGCGATGCCGTTCGGCGGGCCTATCCGACC
AGTCGGCGCAAAATACCGGG

Downstream 100 bases:

>100_bases
ACGTCCGCCAGAGCCGATCCGGGCCTTCGGGTGAACGCGGTATCAGACAGCCGCGAGCTCATGGCCTGAGCGGCGCCGAA
AGCTCCCGTGCATGGACCTC

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAY
VTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWV
RMKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG
ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLV
DEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF

Sequences:

>Translated_377_residues
MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAY
VTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWV
RMKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG
ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLV
DEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF
>Mature_376_residues
SVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHATHGATAYV
TLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVR
MKAATSLDGFTALPDGTSQWITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPGA
RFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNGALVRARLVD
EILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIARGAGRDVF

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=372, Percent_Identity=45.1612903225806, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 39794; Mature: 39663

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAE
CCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCHH
VMALRDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAG
EEEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC
QGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQ
CCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEHHCCCCCCEECCCCCHH
WITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEHHCCCCCC
ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVN
CCEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCC
ELHVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDR
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGADLRIIARGAGRDVF
CCCCEEEEEECCCCCCC
>Mature Secondary Structure 
SVPSAPASPADLMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAE
CCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCHHHHCCCCCCCCCCCCHH
VMALRDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAG
EEEEHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECC
QGFERLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQ
CCHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEHHCCCCCCEECCCCCHH
WITSPEARADGHAWRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPG
HCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEHHCCCCCC
ARFFEVPQRQILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVN
CCEEECCCEEEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHHHHCCCC
ELHVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDR
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGADLRIIARGAGRDVF
CCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1406588; 9278503; 9068650 [H]