Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120612199
Identifier: 120612199
GI number: 120612199
Start: 3926113
End: 3926760
Strand: Reverse
Name: 120612199
Synonym: Aave_3552
Alternate gene names: NA
Gene position: 3926760-3926113 (Counterclockwise)
Preceding gene: 120612200
Following gene: 120612198
Centisome position: 73.36
GC content: 64.81
Gene sequence:
>648_bases ATGATGTCCCGTTCTCACCTCGAAGACCAAGTATGGGGCGTGGTTTCCCGTCGCCAGGCAGAGGCAGGCATGTCGCTGAT CGTCGTCCTGCTGATCCTGGTAGTGGTATCCATCCTGGGCGTGGCGGGCATCCAGATCTCGATGATGGGCGAGCGCTCGA CCCGCAACGACCGCGACAAGCAGGTGGCGTGGCAGTCCGCGGAGGCGGCGCTCATCGATGCGGAACTGGACATCCTGGGC AAACCCGATGCCTCCACGGTGACCAAGCGTGGGGAAGTGTTCAAGCGCGGCAGCACGGACGTCGGGAAATTTCTTCCGGG TTGCGGCGGCGATCGGGACGCCAAGAACCTGGGCCTGTGCTATTCCCCGTCCGGGGCGGCGCCTGCATGGCTGACGGTGG ATCTGGCGGCATCCACCAATCCCCAGTCCGTGGCTTTCGGCACGTTTACCGGGCGTGCGTTTCCGTCGGGTCAGGCTGGC CTGCAGCCCGCTGCGCCGCCGCGCTACGTGATCGAACTGGTCGAAGACCCCACAGACGCCCGCACCACGGCGCCCAAGGA CCGCAAATACATCTACCGCGTGACCGCCATGGGATTCGGCCCCAGTGCCTCCACCCAGGGCGTACTGCAGATCGTCTACA GAAACTGA
Upstream 100 bases:
>100_bases CCAACGACCCCGGCACCGTATTCACACCGACGGCGGACGGCCGGTTGCGGCAGGTGGTCACCTTCACAGTGCATTTGCGC AACAACCAGCGGGAGCCTGA
Downstream 100 bases:
>100_bases GCCCGCCATGAACTCCCAGAGTCCATTCCTCCGGCCCTCCCCGCGCCAGCGGGGCTTCATCAACAAGCCCTTCGTCGGGG CCGTGGCCATCCTGGCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Type IV Pilus Assembly Protein PilX; PilX Type IV Pilus Assembly Protein; Type 4 Fimbrial Biogenesis Protein Pilx-Related Protein; Type-4 Fimbrial Biogenesis Protein
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MMSRSHLEDQVWGVVSRRQAEAGMSLIVVLLILVVVSILGVAGIQISMMGERSTRNDRDKQVAWQSAEAALIDAELDILG KPDASTVTKRGEVFKRGSTDVGKFLPGCGGDRDAKNLGLCYSPSGAAPAWLTVDLAASTNPQSVAFGTFTGRAFPSGQAG LQPAAPPRYVIELVEDPTDARTTAPKDRKYIYRVTAMGFGPSASTQGVLQIVYRN
Sequences:
>Translated_215_residues MMSRSHLEDQVWGVVSRRQAEAGMSLIVVLLILVVVSILGVAGIQISMMGERSTRNDRDKQVAWQSAEAALIDAELDILG KPDASTVTKRGEVFKRGSTDVGKFLPGCGGDRDAKNLGLCYSPSGAAPAWLTVDLAASTNPQSVAFGTFTGRAFPSGQAG LQPAAPPRYVIELVEDPTDARTTAPKDRKYIYRVTAMGFGPSASTQGVLQIVYRN >Mature_215_residues MMSRSHLEDQVWGVVSRRQAEAGMSLIVVLLILVVVSILGVAGIQISMMGERSTRNDRDKQVAWQSAEAALIDAELDILG KPDASTVTKRGEVFKRGSTDVGKFLPGCGGDRDAKNLGLCYSPSGAAPAWLTVDLAASTNPQSVAFGTFTGRAFPSGQAG LQPAAPPRYVIELVEDPTDARTTAPKDRKYIYRVTAMGFGPSASTQGVLQIVYRN
Specific function: Unknown
COG id: COG4726
COG function: function code NU; Tfp pilus assembly protein PilX
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22943; Mature: 22943
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSRSHLEDQVWGVVSRRQAEAGMSLIVVLLILVVVSILGVAGIQISMMGERSTRNDRDK CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHH QVAWQSAEAALIDAELDILGKPDASTVTKRGEVFKRGSTDVGKFLPGCGGDRDAKNLGLC HHHHHCCCEEEEECEEEECCCCCHHHHHHCCHHHHCCCCCHHHHCCCCCCCCCCCCCCEE YSPSGAAPAWLTVDLAASTNPQSVAFGTFTGRAFPSGQAGLQPAAPPRYVIELVEDPTDA ECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC RTTAPKDRKYIYRVTAMGFGPSASTQGVLQIVYRN CCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECC >Mature Secondary Structure MMSRSHLEDQVWGVVSRRQAEAGMSLIVVLLILVVVSILGVAGIQISMMGERSTRNDRDK CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHH QVAWQSAEAALIDAELDILGKPDASTVTKRGEVFKRGSTDVGKFLPGCGGDRDAKNLGLC HHHHHCCCEEEEECEEEECCCCCHHHHHHCCHHHHCCCCCHHHHCCCCCCCCCCCCCCEE YSPSGAAPAWLTVDLAASTNPQSVAFGTFTGRAFPSGQAGLQPAAPPRYVIELVEDPTDA ECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC RTTAPKDRKYIYRVTAMGFGPSASTQGVLQIVYRN CCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA