Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612200
Identifier: 120612200
GI number: 120612200
Start: 3926757
End: 3927806
Strand: Reverse
Name: 120612200
Synonym: Aave_3553
Alternate gene names: NA
Gene position: 3927806-3926757 (Counterclockwise)
Preceding gene: 120612201
Following gene: 120612199
Centisome position: 73.38
GC content: 63.52
Gene sequence:
>1050_bases ATGACTCGCTTTTCCCATCCCGTGACCCGCCGGTTACGGCAGAACGGCCTCACGCTCGTGGAGCTGATGGTCGCCATGGT CATCAGCCTGCTGATCGTGCTGGCCGCGGCGGTGAGTCTCGTGGTCGCCCGGCAGGGCTTCAACAACGTCGATGCCGCAT CGCAACTGCGCGACAACGCCCGCTTCGTGGAAGACATGGTCCAGCGCCTGGGTGTGCAGGCGGGCTACCGCGACCTGTTC CATGCCGCCTACGAACAAAGTGCCAGCACCACCGGGATCGATCCGTCGGCGGTGCCTAATACCTTCGTCTATGGGTTCAA CAACAAGGCGCGCGCATCCGCTGATAACTGGTATGAAGCGAGCACGAACCGCACATCGGGCAGTGTGGGGTATGGAAGCG ACGTGCTCGTGCTGCGTTTTCAGCCCGCGACGTCCAACAGCGAGGCCGCCAAGACGGATAAGGGCATGATCGACTGCTCC GGCAACACGCCCCAGGTCGGTGCGAAGGACCGCTATGACCGGGTGACAAGCGTGCTGCATGTCGCGATCAGCAACGACGG CGAGCCGGCGCTGATGTGTACGACCTGGATGCGCGATCCCGGGACAGAAGCTCTCACCAAATCCGACCCGCTTCCCCTGA TCTCCGGCGTCGAAAATTTCCAGGTGCTCTACGGCGTTGACGGCATTTCCGCCAACAATGCCACGATGCCCGCGGCTTCG ACAGCGGACAGCGTGCAGGACCGCTTCCTGCGCGCCGACCAGATCACGGTGTCGAACCCATTGGTGTCGGCCGCGAACTG GCGCCGTGTGCGCAGCATCCGCATTGGCATGGTATTGCGGGGCGCTCCGAACTCGGCCGTGGACCGTACATCCCAGACTT TCTATCCCCTGGGCACCGCGAAAGGGTCGAGCGGGGGGAGCGTCGGCAGCATGTTTGCCGATGCCACCAACGACCCCGGC ACCGTATTCACACCGACGGCGGACGGCCGGTTGCGGCAGGTGGTCACCTTCACAGTGCATTTGCGCAACAACCAGCGGGA GCCTGAATGA
Upstream 100 bases:
>100_bases CTGCCACCAGTGACGGCGTGGAAACCGCCACGGCCAGCGGCAGCTATCCCTACGTGGTGTTTCCCGTCACGAGCGGCAAC CCGGTGGAAGCCCCTTCGCT
Downstream 100 bases:
>100_bases TGTCCCGTTCTCACCTCGAAGACCAAGTATGGGGCGTGGTTTCCCGTCGCCAGGCAGAGGCAGGCATGTCGCTGATCGTC GTCCTGCTGATCCTGGTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Tfp Pilus Assembly Protein PilW; Type IV Pilus Assembly Protein PilW
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MTRFSHPVTRRLRQNGLTLVELMVAMVISLLIVLAAAVSLVVARQGFNNVDAASQLRDNARFVEDMVQRLGVQAGYRDLF HAAYEQSASTTGIDPSAVPNTFVYGFNNKARASADNWYEASTNRTSGSVGYGSDVLVLRFQPATSNSEAAKTDKGMIDCS GNTPQVGAKDRYDRVTSVLHVAISNDGEPALMCTTWMRDPGTEALTKSDPLPLISGVENFQVLYGVDGISANNATMPAAS TADSVQDRFLRADQITVSNPLVSAANWRRVRSIRIGMVLRGAPNSAVDRTSQTFYPLGTAKGSSGGSVGSMFADATNDPG TVFTPTADGRLRQVVTFTVHLRNNQREPE
Sequences:
>Translated_349_residues MTRFSHPVTRRLRQNGLTLVELMVAMVISLLIVLAAAVSLVVARQGFNNVDAASQLRDNARFVEDMVQRLGVQAGYRDLF HAAYEQSASTTGIDPSAVPNTFVYGFNNKARASADNWYEASTNRTSGSVGYGSDVLVLRFQPATSNSEAAKTDKGMIDCS GNTPQVGAKDRYDRVTSVLHVAISNDGEPALMCTTWMRDPGTEALTKSDPLPLISGVENFQVLYGVDGISANNATMPAAS TADSVQDRFLRADQITVSNPLVSAANWRRVRSIRIGMVLRGAPNSAVDRTSQTFYPLGTAKGSSGGSVGSMFADATNDPG TVFTPTADGRLRQVVTFTVHLRNNQREPE >Mature_348_residues TRFSHPVTRRLRQNGLTLVELMVAMVISLLIVLAAAVSLVVARQGFNNVDAASQLRDNARFVEDMVQRLGVQAGYRDLFH AAYEQSASTTGIDPSAVPNTFVYGFNNKARASADNWYEASTNRTSGSVGYGSDVLVLRFQPATSNSEAAKTDKGMIDCSG NTPQVGAKDRYDRVTSVLHVAISNDGEPALMCTTWMRDPGTEALTKSDPLPLISGVENFQVLYGVDGISANNATMPAAST ADSVQDRFLRADQITVSNPLVSAANWRRVRSIRIGMVLRGAPNSAVDRTSQTFYPLGTAKGSSGGSVGSMFADATNDPGT VFTPTADGRLRQVVTFTVHLRNNQREPE
Specific function: Unknown
COG id: COG4966
COG function: function code NU; Tfp pilus assembly protein PilW
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37561; Mature: 37429
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFSHPVTRRLRQNGLTLVELMVAMVISLLIVLAAAVSLVVARQGFNNVDAASQLRDNA CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RFVEDMVQRLGVQAGYRDLFHAAYEQSASTTGIDPSAVPNTFVYGFNNKARASADNWYEA HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEC STNRTSGSVGYGSDVLVLRFQPATSNSEAAKTDKGMIDCSGNTPQVGAKDRYDRVTSVLH CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHE VAISNDGEPALMCTTWMRDPGTEALTKSDPLPLISGVENFQVLYGVDGISANNATMPAAS EEECCCCCCEEEEEEECCCCCCCHHCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCC TADSVQDRFLRADQITVSNPLVSAANWRRVRSIRIGMVLRGAPNSAVDRTSQTFYPLGTA CHHHHHHHHHHHCCEEECCCCCCHHHHHHHHEEEEEEEEECCCCHHHHCCCCCEEECCCC KGSSGGSVGSMFADATNDPGTVFTPTADGRLRQVVTFTVHLRNNQREPE CCCCCCCHHHHHHCCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCC >Mature Secondary Structure TRFSHPVTRRLRQNGLTLVELMVAMVISLLIVLAAAVSLVVARQGFNNVDAASQLRDNA CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RFVEDMVQRLGVQAGYRDLFHAAYEQSASTTGIDPSAVPNTFVYGFNNKARASADNWYEA HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEC STNRTSGSVGYGSDVLVLRFQPATSNSEAAKTDKGMIDCSGNTPQVGAKDRYDRVTSVLH CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHE VAISNDGEPALMCTTWMRDPGTEALTKSDPLPLISGVENFQVLYGVDGISANNATMPAAS EEECCCCCCEEEEEEECCCCCCCHHCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCC TADSVQDRFLRADQITVSNPLVSAANWRRVRSIRIGMVLRGAPNSAVDRTSQTFYPLGTA CHHHHHHHHHHHCCEEECCCCCCHHHHHHHHEEEEEEEEECCCCHHHHCCCCCEEECCCC KGSSGGSVGSMFADATNDPGTVFTPTADGRLRQVVTFTVHLRNNQREPE CCCCCCCHHHHHHCCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA