Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is dosP [H]
Identifier: 120612193
GI number: 120612193
Start: 3917121
End: 3918017
Strand: Direct
Name: dosP [H]
Synonym: Aave_3545
Alternate gene names: 120612193
Gene position: 3917121-3918017 (Clockwise)
Preceding gene: 120612192
Following gene: 120612194
Centisome position: 73.18
GC content: 68.12
Gene sequence:
>897_bases GTGCGCGCGCTGCACAAGCCGCTGGCAAGCAGCGATCTGCAGGCGATCCTGCGGGAGGTGCCGTCTCCGCCAGCGCCCGC CGCCGACCGGCGCCGCGCCCCCCGCATGCCGATCGACGCGGCGATGCTCGAGCAGGCCATCCGGGGCGGAGGCATCACGC CCCACTTCCAGCCGAAAGTGGACACCCGGACCGGCATGCTGCGAGGTGTCGAGGCCCTGGCGCGCTGGAACCATCCGGTC CTGGGCATGGTGCCGCCGGACGAATTCATTCCGCTGGCCGAACGCGTGGGGCTCATCCACGAGTTGACGCTGGCCATGAT GGAGCGCAGCTTCCTGCAGTGCGCCGCCTGGCAATCGCGCGGCATGCGGCTCACGCTGGCCATCAACCTGTCTCCGCAGT TGCTGGCCTCGCCGGACATCGTGAACCAGATCTGCGCGCAGCAGATGCGGTACGGCCTGGCGCCTTCGCAACTGATGCTG GAGGTCGCCGAGGGATCGATGGTGGAAACCTGCAGCGCCGCCCACTCTGCGCTGGTACGCCTGCGGCTCAAGGGGTTCGG TTTGTCCATCGATGACTACGGCACCGGTTTCTCCTCGCTGCGGCAGCTGTCGCGCATTCCCTTCACCGAACTCAAGATAG ACCGCTCGTTCGTGCACGGCGCCCATCGCCGGAAAAGCCTGCGGGTGATCCTGGAATCGGCGCTGGACCTCGCACGGGGA CTCAACCTCACCACCGTGGCCGAGGGCGTGGAGCACATGGAGGACTGGCGGCTGCTGCAGGATTTCGGCTGCACCAGCGC CCAGGGATGGCTGATCGCCAAGGCGATGCCCGGCGAGGACCTGCACTCCTGGAACCGGACCCACCGGTCGCGCCTGGACT CCCTGCGGCTTAGCTGA
Upstream 100 bases:
>100_bases ATGCCGTGCGGCTCTGCCACGCCCTGGGGGCCGGGCAGGTACTGGAGGCGCGCCACGGCCGCGAGGCCTGGACTCCGTCC AGTCGCTGGGCACGTCGGTC
Downstream 100 bases:
>100_bases CCACCGTCCCCCCATGCCAAACAGAACCATCTCCGATCGCGACTACGGGCATTTCCAGCGCTTCATCTTCGATGCGGCCG GCATCACGCTGTCCCCGGCG
Product: diguanylate phosphodiesterase
Products: NA
Alternate protein names: Direct oxygen sensing phosphodiesterase; Direct oxygen sensor protein; Ec DOS; Heme-regulated cyclic di-GMP phosphodiesterase, [H]
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS
Sequences:
>Translated_298_residues MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS >Mature_298_residues MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKVDTRTGMLRGVEALARWNHPV LGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSRGMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLML EVAEGSMVETCSAAHSALVRLRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS
Specific function: In association with DosC is involved in the production and removal of the second messenger c-di-GMP in response to changing O(2) levels. Has phosphodiesterase (PDE) activity with c- di-GMP (PubMed:15995192), very poor activity on cAMP (PubMed:15995192) bu
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI87081921, Length=261, Percent_Identity=36.7816091954023, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1787541, Length=269, Percent_Identity=31.5985130111524, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=37.037037037037, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=31.8181818181818, Blast_Score=137, Evalue=9e-34, Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=34.5528455284553, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=34.297520661157, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI226510982, Length=229, Percent_Identity=36.2445414847162, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=30.9623430962343, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=31.0077519379845, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI87081980, Length=229, Percent_Identity=31.8777292576419, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87082096, Length=212, Percent_Identity=30.188679245283, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.4526748971193, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=28.476821192053, Blast_Score=71, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR012226 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013656 - InterPro: IPR013767 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00989 PAS; PF08448 PAS_4 [H]
EC number: =3.1.4.52 [H]
Molecular weight: Translated: 33075; Mature: 33075
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS50883 EAL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKV CCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC DTRTGMLRGVEALARWNHPVLGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSR CHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLMLEVAEGSMVETCSAAHSALVR CCEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH LRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG HHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRALHKPLASSDLQAILREVPSPPAPAADRRRAPRMPIDAAMLEQAIRGGGITPHFQPKV CCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC DTRTGMLRGVEALARWNHPVLGMVPPDEFIPLAERVGLIHELTLAMMERSFLQCAAWQSR CHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GMRLTLAINLSPQLLASPDIVNQICAQQMRYGLAPSQLMLEVAEGSMVETCSAAHSALVR CCEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH LRLKGFGLSIDDYGTGFSSLRQLSRIPFTELKIDRSFVHGAHRRKSLRVILESALDLARG HHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LNLTTVAEGVEHMEDWRLLQDFGCTSAQGWLIAKAMPGEDLHSWNRTHRSRLDSLRLS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]